Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   VITFI_RS15455 Genome accession   NZ_CP022423
Coordinates   3281861..3283387 (-) Length   508 a.a.
NCBI ID   WP_089417741.1    Uniprot ID   -
Organism   Vitreoscilla filiformis strain ATCC 15551     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3276861..3288387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VITFI_RS15450 (VITFI_CDS3096) ampD 3281257..3281880 (-) 624 WP_198301523.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  VITFI_RS15455 (VITFI_CDS3097) pilR 3281861..3283387 (-) 1527 WP_089417741.1 sigma-54 dependent transcriptional regulator Regulator
  VITFI_RS15460 (VITFI_CDS3098) - 3283421..3285136 (-) 1716 WP_089417742.1 PAS domain-containing sensor histidine kinase -
  VITFI_RS15465 (VITFI_CDS3099) - 3285153..3285953 (-) 801 WP_089418202.1 inner membrane protein YpjD -
  VITFI_RS15470 (VITFI_CDS3100) ffh 3286026..3287405 (+) 1380 WP_089417743.1 signal recognition particle protein -
  VITFI_RS15475 (VITFI_CDS3101) pilA 3287429..3288331 (-) 903 WP_232476635.1 signal recognition particle-docking protein FtsY Machinery gene

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55227.56 Da        Isoelectric Point: 5.0173

>NTDB_id=239292 VITFI_RS15455 WP_089417741.1 3281861..3283387(-) (pilR) [Vitreoscilla filiformis strain ATCC 15551]
MTDISRADAILVVDDEPDLLTLYELTLLREGYTVETAGSVQEAWRQLQTRRFKLVITDMRLPDESGMVLLRRLEEAGRAE
RVIVVTAYGSAENAVSALKAGAFDYLTKPVDLRQLRGVVSAAMGRKSGQTPAPAATAVRSIALDRLVGASQAMCQVRSLV
QKVARSMAPVLVHGESGTGKELVARAIHEVSVRATLPFIAVNCGAIPENLLEAEFFGYRRGAFTGAQEDREGFFQAANHG
TLFLDEIGDLPLTMQAKLLRVIQERAVRPVGAVMEMPLNVRIVSATHRDLAVEVAAGRFRQDLFYRLNVIAITVPALRER
RDDVPLLAAALLARLAQEAGLGMVPALSPPAQEALKAYDFPGNVRELENMLMRAMALGDHAVIEVADLGLDEAEPGAAEL
PLDPLSTPQAGLWVLPPEEDVVARLIASPPVPAAAEPAFATRADSLPCNLERYLDDVERGILVRALQEHGFNRTAAGQRL
GLTLRQMRYRMARLGITADDCVDDTHDL

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=239292 VITFI_RS15455 WP_089417741.1 3281861..3283387(-) (pilR) [Vitreoscilla filiformis strain ATCC 15551]
ATGACTGACATTTCCCGCGCCGATGCCATCCTGGTGGTGGATGACGAACCCGATCTGCTGACGTTGTACGAGTTGACCCT
GCTGCGTGAGGGCTACACGGTGGAGACTGCCGGCAGTGTTCAAGAAGCGTGGCGGCAGTTGCAAACCCGGCGCTTCAAAC
TGGTGATCACCGACATGCGCTTGCCCGACGAGTCGGGCATGGTGTTGCTGCGCCGGTTGGAGGAGGCCGGGCGTGCGGAG
CGCGTGATCGTGGTCACTGCGTACGGTTCAGCGGAAAACGCGGTCAGTGCCCTCAAAGCCGGGGCGTTCGACTATCTCAC
CAAACCCGTGGATTTACGGCAGTTGCGGGGGGTGGTGTCCGCCGCGATGGGACGCAAGAGCGGACAGACCCCAGCCCCAG
CGGCCACCGCTGTGCGCAGCATTGCGCTGGATCGTTTGGTGGGGGCTTCACAAGCCATGTGCCAAGTGCGCAGCTTGGTT
CAAAAGGTGGCGCGCAGCATGGCGCCTGTGCTGGTGCATGGCGAGTCGGGCACCGGCAAGGAGTTGGTGGCGCGGGCCAT
CCATGAAGTCAGTGTGCGGGCCACGTTGCCTTTCATCGCGGTCAACTGCGGGGCGATTCCTGAAAATCTGCTCGAAGCAG
AGTTTTTTGGCTACCGGCGAGGGGCGTTCACCGGGGCTCAAGAAGACCGAGAGGGGTTTTTCCAGGCCGCCAACCATGGC
ACGTTGTTTCTGGACGAGATTGGCGACTTGCCCTTGACCATGCAAGCCAAGCTGTTGCGGGTCATCCAAGAGCGGGCGGT
GCGGCCTGTTGGGGCGGTGATGGAGATGCCGCTGAACGTGCGCATCGTCAGCGCCACCCATCGCGATCTGGCGGTGGAAG
TTGCGGCTGGGCGTTTTCGGCAGGATTTGTTTTATCGGCTGAACGTCATCGCCATTACCGTACCGGCCTTGCGTGAGCGT
CGGGACGATGTGCCATTGCTGGCCGCAGCGTTGCTGGCGCGCCTGGCCCAGGAGGCTGGGTTGGGCATGGTGCCTGCGTT
GTCGCCGCCTGCGCAGGAGGCCCTCAAAGCCTACGATTTTCCCGGCAATGTGCGCGAGTTAGAAAACATGCTCATGCGCG
CCATGGCGTTGGGGGATCATGCCGTGATCGAAGTCGCCGATCTCGGTTTGGACGAGGCGGAGCCAGGTGCCGCAGAGCTT
CCGCTTGATCCTCTCTCGACCCCACAAGCGGGGCTGTGGGTGCTGCCGCCCGAAGAGGACGTGGTGGCACGGCTCATCGC
TTCACCGCCAGTGCCTGCGGCAGCCGAACCAGCGTTCGCCACCCGTGCAGACAGCCTGCCCTGCAATTTGGAGCGTTATT
TGGACGACGTCGAACGAGGCATCCTGGTTCGTGCTTTGCAGGAGCATGGTTTCAATCGAACGGCGGCAGGGCAGCGTTTG
GGCCTGACCCTGCGACAAATGCGCTATCGCATGGCCCGGCTGGGCATTACCGCAGACGATTGCGTCGATGACACCCATGA
CCTCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-118)

Sigma-54 interaction domain (Sigma54_activat)

(146-312)

Bacterial regulatory protein, Fis family (HTH_8)

(454-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

50.403

97.638

0.492
  pilR Acinetobacter baumannii strain A118

39.641

98.819

0.392

Multiple sequence alignment