Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PBPR_RS16705 Genome accession   NC_006370
Coordinates   3726755..3727306 (-) Length   183 a.a.
NCBI ID   WP_011219846.1    Uniprot ID   -
Organism   Photobacterium profundum SS9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3721755..3732306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PBPR_RS16695 (PBPRA3287) csrD 3723342..3725285 (-) 1944 WP_011219845.1 RNase E specificity factor CsrD -
  PBPR_RS16700 - 3725776..3726684 (+) 909 WP_041394545.1 LysR family transcriptional regulator -
  PBPR_RS16705 (PBPRA3289) ssb 3726755..3727306 (-) 552 WP_011219846.1 single-stranded DNA-binding protein Machinery gene
  PBPR_RS16710 (PBPRA3290) uvrA 3727669..3730494 (+) 2826 WP_011219847.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20433.53 Da        Isoelectric Point: 5.2170

>NTDB_id=23895 PBPR_RS16705 WP_011219846.1 3726755..3727306(-) (ssb) [Photobacterium profundum SS9]
MASRGVNKVILVGNLGNDPEIRYMPSGSAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQNQQGQDQYTTEVVVQGFNGVMQMLGGRQGGGQQQQQQQQQGNWGKPQQPAAAPQQSVAPQQQQQAPQQPQ
QAPQQPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=23895 PBPR_RS16705 WP_011219846.1 3726755..3727306(-) (ssb) [Photobacterium profundum SS9]
ATGGCCAGTCGTGGTGTAAATAAGGTTATCTTAGTCGGTAACTTAGGTAATGACCCAGAAATCCGTTATATGCCAAGTGG
TAGTGCAGTAGCAAACATAACAATTGCTACCTCTGAATCATGGCGTGATAAGGCAACGGGCGAGCAACGTGAAAAAACAG
AATGGCACCGTGTGGCGCTGTTCGGTAAGCTTGCTGAAGTTGCTGGTGAATACTTGCGTAAAGGTTCACAGGTATACATC
GAAGGTCAATTACAAACACGTAAATGGCAAAATCAGCAAGGCCAAGATCAGTACACAACAGAAGTTGTTGTTCAGGGCTT
TAATGGCGTAATGCAAATGCTAGGCGGTCGTCAAGGCGGCGGTCAGCAGCAACAACAACAGCAACAGCAAGGTAACTGGG
GTAAACCTCAACAACCTGCAGCTGCTCCTCAGCAGAGCGTTGCACCTCAACAACAGCAACAGGCTCCTCAGCAACCGCAG
CAGGCTCCTCAACAGCCTCAGCAGCAGTACAATGAGCCCCCAATGGATTTTGATGATGATATCCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.603

100

0.77
  ssb Glaesserella parasuis strain SC1401

53.968

100

0.557
  ssb Neisseria gonorrhoeae MS11

43.784

100

0.443
  ssb Neisseria meningitidis MC58

43.716

100

0.437

Multiple sequence alignment