Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   PBPR_RS06115 Genome accession   NC_006370
Coordinates   1356556..1357143 (+) Length   195 a.a.
NCBI ID   WP_011217948.1    Uniprot ID   Q6LSV8
Organism   Photobacterium profundum SS9     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1351556..1362143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PBPR_RS06095 (PBPRA1203) ptsG 1351645..1353078 (+) 1434 WP_011217944.1 PTS glucose transporter subunit IIBC -
  PBPR_RS06100 (PBPRA1204) - 1353298..1354197 (-) 900 WP_041393985.1 lysine exporter LysO family protein -
  PBPR_RS06105 (PBPRA1205) - 1354616..1355539 (-) 924 WP_011217946.1 HDOD domain-containing protein -
  PBPR_RS06110 (PBPRA1206) - 1355680..1356264 (-) 585 WP_011217947.1 LON peptidase substrate-binding domain-containing protein -
  PBPR_RS06115 (PBPRA1207) tfoX 1356556..1357143 (+) 588 WP_011217948.1 TfoX/Sxy family DNA transformation protein Regulator
  PBPR_RS06120 (PBPRA1208) dsdC 1357241..1358155 (+) 915 WP_011217949.1 DNA-binding transcriptional regulator DsdC -
  PBPR_RS06125 (PBPRA1209) - 1358290..1358832 (-) 543 WP_011217950.1 hypothetical protein -
  PBPR_RS06130 (PBPRA1210) - 1359195..1360190 (-) 996 WP_041393986.1 2-hydroxyacid dehydrogenase -
  PBPR_RS06135 (PBPRA1211) - 1360315..1360815 (-) 501 WP_011217952.1 response regulator -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22308.96 Da        Isoelectric Point: 9.3596

>NTDB_id=23875 PBPR_RS06115 WP_011217948.1 1356556..1357143(+) (tfoX) [Photobacterium profundum SS9]
MSAFKEDYLTYLSHFGCYEKRSMFGGTGVFIHGAMYAILTDTTIFIRGGGELDDKLLQLGCLKFKHIKKSTTATVNYYDI
TKLFLRDKNKCHSLINESISFSQKEKAFKCSEESRRLRDLPNMRLTLERMVKKAGIPDVNSFLLLGAAEVFRKVRKTHGT
DIDLKLLWMFAGAINGCHWSLLNDDHKEKLLNAIE

Nucleotide


Download         Length: 588 bp        

>NTDB_id=23875 PBPR_RS06115 WP_011217948.1 1356556..1357143(+) (tfoX) [Photobacterium profundum SS9]
GTGTCAGCTTTCAAGGAAGATTATTTAACGTATTTAAGTCACTTTGGGTGTTATGAAAAACGGTCAATGTTTGGCGGGAC
TGGGGTTTTCATTCATGGGGCTATGTATGCAATTCTGACGGATACCACGATATTTATACGTGGTGGTGGTGAGTTAGATG
ATAAATTACTCCAATTAGGTTGCCTGAAGTTTAAACATATTAAAAAAAGCACCACAGCAACTGTAAACTACTATGATATA
ACGAAATTGTTTTTACGTGACAAAAATAAATGTCACTCACTTATCAATGAATCTATCTCTTTTTCACAAAAAGAGAAGGC
GTTTAAATGCTCAGAAGAGAGTCGACGTCTACGTGATTTACCCAATATGCGGTTAACGCTTGAAAGAATGGTTAAAAAAG
CCGGTATTCCAGATGTGAACAGCTTTCTTTTATTGGGTGCTGCTGAAGTCTTCCGTAAAGTGCGTAAAACGCACGGGACT
GATATCGATCTTAAGTTGCTTTGGATGTTTGCTGGCGCAATCAACGGTTGCCATTGGTCATTATTGAATGATGACCATAA
AGAGAAACTTTTGAACGCCATTGAATAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(114-193)

TfoX N-terminal domain (TfoX_N)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6LSV8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

56.545

97.949

0.554
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

56.545

97.949

0.554
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

56.545

97.949

0.554
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

56.545

97.949

0.554
  tfoX Vibrio cholerae strain A1552

56.545

97.949

0.554
  tfoX Vibrio campbellii strain DS40M4

52.821

100

0.528
  tfoX Aliivibrio fischeri ES114

52.062

99.487

0.518
  tfoX Vibrio parahaemolyticus RIMD 2210633

51.282

100

0.513

Multiple sequence alignment