Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   CEQ48_RS16970 Genome accession   NZ_CP022353
Coordinates   2455886..2456530 (+) Length   214 a.a.
NCBI ID   WP_089072044.1    Uniprot ID   A0AAU8WKD2
Organism   Vibrio tarriae strain 2521-89     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2450886..2461530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ48_RS16955 (CEQ48_16955) - 2452077..2453660 (-) 1584 WP_008486773.1 site-specific integrase -
  CEQ48_RS16960 (CEQ48_16960) - 2453666..2454838 (-) 1173 WP_089072043.1 site-specific integrase -
  CEQ48_RS16965 (CEQ48_16965) ssb 2455058..2455594 (-) 537 WP_001887866.1 single-stranded DNA-binding protein Machinery gene
  CEQ48_RS16970 (CEQ48_16970) qstR 2455886..2456530 (+) 645 WP_089072044.1 LuxR C-terminal-related transcriptional regulator Regulator
  CEQ48_RS16975 (CEQ48_16975) galU 2456701..2457573 (+) 873 WP_181710841.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  CEQ48_RS16980 (CEQ48_16980) uvrA 2457729..2460551 (+) 2823 WP_089072046.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24757.51 Da        Isoelectric Point: 9.1813

>NTDB_id=238649 CEQ48_RS16970 WP_089072044.1 2455886..2456530(+) (qstR) [Vibrio tarriae strain 2521-89]
MQRANYARTIYLLTTQPEALHTGIQAAIELLNLPVPVIEPERLLREYQSDKHKILLLDHAENTQIRQQLGPLKLTSPYFE
TILFNVEKRLRTEDLLTFGNLKGLFYANEDTGFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQSHQAQSTIDLTAREI
QILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=238649 CEQ48_RS16970 WP_089072044.1 2455886..2456530(+) (qstR) [Vibrio tarriae strain 2521-89]
ATGCAACGAGCCAACTATGCACGCACTATTTACTTATTAACGACACAGCCGGAAGCTTTACATACCGGTATTCAGGCCGC
GATTGAACTGTTGAACCTCCCTGTTCCTGTGATTGAGCCAGAACGCTTATTGCGAGAGTATCAATCCGATAAACACAAAA
TATTGTTGCTCGATCACGCGGAAAATACCCAAATTCGCCAGCAATTGGGTCCCCTCAAGCTGACCAGCCCCTATTTTGAA
ACCATTTTGTTTAATGTCGAGAAACGGTTAAGAACGGAAGATCTGCTCACTTTTGGCAACCTCAAAGGTCTATTTTACGC
CAATGAAGACACAGGCTTTATTGCCCATGGTCTTGGGGAAATCATAAATGGCCAGAATTGGCTTCCCCGGCATGTCAGTA
GCCAATTATTACATTACTATCGTTACGCTTTCCAAAGCCATCAAGCTCAATCGACGATCGATCTTACTGCGCGTGAAATC
CAGATCCTACGTTGTTTACAAACCGGTGCATCGAATATGCAAATCGCTGAAAATTTATTTATTAGTGAGTTCACGGTGAA
ATCGCACCTTTATCAGATATTTAAAAAATTGAACGTTAAAAATCGGGTCAAAGCGATAGCTTGGGTCAATCAAAATTTAC
TGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

95.794

100

0.958
  qstR Vibrio campbellii strain DS40M4

51.869

100

0.519
  qstR Vibrio parahaemolyticus RIMD 2210633

50.935

100

0.509

Multiple sequence alignment