Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CEQ48_RS16965 Genome accession   NZ_CP022353
Coordinates   2455058..2455594 (-) Length   178 a.a.
NCBI ID   WP_001887866.1    Uniprot ID   -
Organism   Vibrio tarriae strain 2521-89     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2443635..2454838 2455058..2455594 flank 220


Gene organization within MGE regions


Location: 2443635..2455594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ48_RS16935 (CEQ48_16935) - 2443635..2445491 (-) 1857 WP_198301186.1 hypothetical protein -
  CEQ48_RS16940 (CEQ48_16940) - 2445502..2449599 (-) 4098 WP_089072040.1 hypothetical protein -
  CEQ48_RS16945 (CEQ48_16945) - 2449606..2450082 (-) 477 WP_089072041.1 protein kinase -
  CEQ48_RS16950 (CEQ48_16950) - 2450075..2452084 (-) 2010 WP_089072042.1 integrase -
  CEQ48_RS16955 (CEQ48_16955) - 2452077..2453660 (-) 1584 WP_008486773.1 site-specific integrase -
  CEQ48_RS16960 (CEQ48_16960) - 2453666..2454838 (-) 1173 WP_089072043.1 site-specific integrase -
  CEQ48_RS16965 (CEQ48_16965) ssb 2455058..2455594 (-) 537 WP_001887866.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 20012.21 Da        Isoelectric Point: 5.2581

>NTDB_id=238648 CEQ48_RS16965 WP_001887866.1 2455058..2455594(-) (ssb) [Vibrio tarriae strain 2521-89]
MASRGVNKVILIGNLGQDPEVRYMPSGDAMVNLTVATSETWRDKATGEQKEKTEWHRVSVFGKTAEFIGEYARKGTQVYV
DGQLQTRKWQDQQGQERYTTEVVVRWPAGEVQIMGSRPQQQGGMPAQGGMNAPAQQGSWGQPQQPAKQHQPMQQSAPQQY
SQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=238648 CEQ48_RS16965 WP_001887866.1 2455058..2455594(-) (ssb) [Vibrio tarriae strain 2521-89]
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAATTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGTGG
CGATGCGATGGTGAATTTAACTGTTGCAACCTCCGAAACTTGGCGTGATAAAGCCACAGGTGAGCAAAAGGAAAAAACCG
AATGGCATCGAGTGTCTGTTTTCGGTAAAACGGCTGAATTCATTGGTGAATATGCACGCAAGGGAACCCAAGTTTATGTT
GATGGGCAATTGCAAACGCGTAAGTGGCAAGATCAGCAAGGACAAGAGCGTTATACGACGGAAGTGGTTGTGCGTTGGCC
AGCTGGTGAGGTGCAAATTATGGGTAGCCGCCCTCAACAGCAAGGTGGAATGCCAGCTCAAGGCGGCATGAATGCTCCTG
CGCAGCAAGGAAGTTGGGGGCAACCACAACAACCAGCGAAGCAGCACCAACCGATGCAACAATCTGCGCCTCAACAGTAC
TCGCAACCGCAGTACAACGAGCCACCGATGGATTTTGATGACGACATCCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

83.146

100

0.831
  ssb Glaesserella parasuis strain SC1401

50.273

100

0.517
  ssb Neisseria meningitidis MC58

43.889

100

0.444
  ssb Neisseria gonorrhoeae MS11

43.889

100

0.444

Multiple sequence alignment