Detailed information    

insolico Bioinformatically predicted

Overview


Name   pknB   Type   Regulator
Locus tag   LL14B4_RS10685 Genome accession   NZ_CP028160
Coordinates   2166437..2168320 (-) Length   627 a.a.
NCBI ID   WP_058211607.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain 14B4     
Function   modulate the activity of ComDE; modulate the activity of VicKR (predicted from homology)   
Competence regulation

Genomic Context


Location: 2161437..2173320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL14B4_RS10655 (LL14B4_10645) - 2161843..2162523 (-) 681 WP_012898438.1 5'-methylthioadenosine/adenosylhomocysteine nucleosidase -
  LL14B4_RS10660 (LL14B4_10650) macP 2162555..2162833 (-) 279 WP_003130796.1 cell wall synthase accessory phosphoprotein MacP -
  LL14B4_RS10665 (LL14B4_10655) - 2162826..2163410 (-) 585 WP_033899834.1 NUDIX hydrolase -
  LL14B4_RS10670 (LL14B4_10660) glmU 2163515..2164891 (-) 1377 WP_003130798.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  LL14B4_RS10675 (LL14B4_10665) proC 2165119..2165907 (+) 789 WP_033899830.1 pyrroline-5-carboxylate reductase -
  LL14B4_RS10680 (LL14B4_10670) rpsO 2165986..2166255 (-) 270 WP_015427039.1 30S ribosomal protein S15 -
  LL14B4_RS10685 (LL14B4_10675) pknB 2166437..2168320 (-) 1884 WP_058211607.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  LL14B4_RS10690 (LL14B4_10680) - 2168320..2169096 (-) 777 WP_003130802.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  LL14B4_RS10695 (LL14B4_10685) rsmB 2169177..2170451 (-) 1275 WP_109991297.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  LL14B4_RS10700 (LL14B4_10690) - 2170650..2171156 (-) 507 WP_012898444.1 Asp23/Gls24 family envelope stress response protein -
  LL14B4_RS10705 (LL14B4_10695) - 2171177..2171365 (-) 189 WP_033899826.1 DUF2273 domain-containing protein -
  LL14B4_RS10710 (LL14B4_10700) amaP 2171376..2171936 (-) 561 WP_109991298.1 alkaline shock response membrane anchor protein AmaP -
  LL14B4_RS10715 (LL14B4_10705) - 2171964..2172206 (-) 243 WP_003131476.1 GlsB/YeaQ/YmgE family stress response membrane protein -

Sequence


Protein


Download         Length: 627 a.a.        Molecular weight: 67948.01 Da        Isoelectric Point: 4.7401

>NTDB_id=238630 LL14B4_RS10685 WP_058211607.1 2166437..2168320(-) (pknB) [Lactococcus lactis subsp. lactis strain 14B4]
MIQIGKIFADRYRIIKEIGRGGMANVYQGEDTFLGDRLVAIKVLRSNFENDDIAIARFQREAFAMAELSHPNIVGISDVG
EFESQQYIVMEFVDGMTLKQYINQNAPLANDEAIEIITEILSAMDMAHSHGIIHRDLKPQNVLVSSSGTVKVTDFGIAKA
LSETSLTQTNTMFGSVHYLSPEQARGSNATVQSDIYAIGIILFELLTGQIPFDGDSAVAIALKHFQESIPSIINLNPEVP
QALENVVIKATAKDIKNRYTDVEEMMTDVATSTSLDRRGEEKLVFNKDHDETKIMPANLINPYDTKPLIDKKEDNDSQTD
EKAASSEVVNKNKKSKKGLIIGLIILLLVVGGATLAWVVSTPTNVKIPNVTNSTLDQAKSKIKDAKLKVGTVHKQQSSTI
AEGKVIKTDPTSGTTVRSNSSVDIYVSTGNEDIIKMKDFVGEKIDEAMATLLKDYGIDESQVTQTSVPSDSYPAGTIIKQ
SPKKGSSFDTKGSEKITFEVSSGKQVEVPDYKPNGQYMTYSQYQAALKAAGFTNITLDPQATTNQQADGYVYSVYPNVGT
SVDPTQEIVVTYSVYTAPSSSSTTSESTTTSETSSSTTSSTSSSTTSQPSTDNNNSSKESSTTSSSS

Nucleotide


Download         Length: 1884 bp        

>NTDB_id=238630 LL14B4_RS10685 WP_058211607.1 2166437..2168320(-) (pknB) [Lactococcus lactis subsp. lactis strain 14B4]
ATGATTCAAATCGGTAAAATCTTTGCCGATCGTTATCGGATTATCAAAGAAATCGGACGTGGCGGAATGGCGAACGTTTA
TCAAGGTGAAGATACTTTTCTTGGTGACCGCTTAGTTGCAATAAAAGTGCTACGTTCAAATTTTGAAAACGATGATATCG
CGATTGCTCGTTTTCAGCGAGAAGCATTCGCCATGGCAGAACTTTCACATCCAAATATCGTAGGTATTTCTGATGTTGGT
GAATTTGAAAGTCAACAATACATTGTCATGGAATTTGTTGACGGCATGACACTTAAACAATACATCAATCAAAATGCACC
TTTAGCCAATGATGAAGCTATTGAAATTATTACTGAAATTTTATCAGCAATGGACATGGCCCATTCACATGGTATTATTC
ACCGGGATTTAAAACCACAAAATGTTTTAGTTTCCAGTAGTGGAACTGTAAAAGTAACGGATTTTGGAATTGCGAAAGCA
CTCTCTGAAACTTCACTTACTCAAACAAATACAATGTTTGGTTCGGTTCATTATTTATCACCAGAGCAAGCGCGTGGTTC
AAATGCAACTGTTCAATCAGATATTTATGCGATTGGAATTATTTTATTTGAACTTTTAACAGGTCAAATTCCATTTGATG
GAGATTCTGCAGTTGCTATCGCTCTAAAACATTTCCAAGAGAGTATTCCAAGCATCATCAATCTCAATCCAGAAGTTCCG
CAAGCTTTGGAAAATGTTGTCATTAAAGCTACAGCGAAAGATATTAAAAATCGCTATACTGATGTAGAAGAAATGATGAC
TGATGTGGCAACTTCAACGAGTCTTGACCGTCGTGGGGAAGAAAAATTAGTTTTCAATAAGGACCATGATGAAACAAAAA
TTATGCCTGCCAATCTAATTAATCCTTATGACACCAAGCCTCTGATTGATAAAAAAGAAGATAATGATTCACAAACAGAT
GAAAAAGCTGCAAGCTCAGAAGTAGTAAATAAAAACAAAAAATCTAAAAAAGGCTTGATTATTGGTCTTATTATCCTTCT
TTTAGTTGTTGGCGGTGCTACTTTGGCTTGGGTTGTCTCAACACCAACTAATGTTAAGATACCTAATGTGACAAACTCGA
CGCTTGACCAAGCAAAAAGCAAAATTAAAGATGCAAAACTAAAAGTGGGAACAGTTCATAAACAACAAAGTTCAACGATT
GCTGAAGGAAAAGTTATCAAGACTGATCCAACTAGTGGAACAACCGTGAGATCTAATAGCTCCGTTGATATTTATGTTTC
TACGGGAAATGAAGATATCATCAAAATGAAGGACTTTGTCGGTGAAAAGATTGATGAGGCGATGGCAACATTACTTAAGG
ATTATGGTATTGATGAAAGCCAAGTCACTCAAACTTCCGTTCCTAGTGATTCTTACCCAGCAGGTACAATCATTAAACAA
AGCCCTAAAAAAGGTTCTAGTTTTGATACCAAAGGGAGTGAAAAAATTACCTTTGAAGTTTCAAGTGGAAAACAAGTTGA
AGTTCCGGATTATAAACCGAACGGTCAATATATGACTTATTCACAGTATCAAGCTGCCTTAAAAGCTGCAGGATTCACTA
ATATTACACTAGACCCTCAAGCAACAACGAATCAACAAGCTGATGGTTATGTTTACTCAGTGTATCCAAATGTAGGGACA
TCTGTTGATCCAACTCAAGAAATTGTAGTCACTTATAGCGTCTATACTGCTCCAAGTTCAAGTTCAACAACTTCTGAATC
AACTACGACGTCTGAAACTTCATCAAGTACAACTTCAAGTACTTCAAGCTCTACAACAAGTCAGCCGTCAACAGATAACA
ACAATAGCAGCAAAGAATCTTCAACAACGTCATCAAGTAGTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pknB Streptococcus mutans UA159

49.081

86.762

0.426

  stkP/pknB Streptococcus salivarius strain HSISS4

51.252

82.775

0.424

  stkP Streptococcus pneumoniae TIGR4

48.024

80.702

0.388

  stkP Streptococcus pneumoniae D39

47.826

80.702

0.386

  stkP Streptococcus pneumoniae R6

47.826

80.702

0.386

  stkP Streptococcus pneumoniae Rx1

47.628

80.702

0.384


Multiple sequence alignment