Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   CEQ48_RS09630 Genome accession   NZ_CP022353
Coordinates   872449..874578 (+) Length   709 a.a.
NCBI ID   WP_232477892.1    Uniprot ID   -
Organism   Vibrio tarriae strain 2521-89     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 867449..879578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ48_RS09605 (CEQ48_09605) - 867797..868372 (-) 576 WP_044126321.1 PilZ domain-containing protein -
  CEQ48_RS09610 (CEQ48_09610) lolC 868548..869757 (+) 1210 Protein_788 lipoprotein-releasing ABC transporter permease subunit LolC -
  CEQ48_RS09615 (CEQ48_09615) lolD 869750..870436 (+) 687 WP_001061290.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  CEQ48_RS09620 (CEQ48_09620) lolE 870437..871681 (+) 1245 WP_089071087.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  CEQ48_RS09625 (CEQ48_09625) - 871796..872326 (-) 531 WP_001881633.1 DUF2062 domain-containing protein -
  CEQ48_RS09630 (CEQ48_09630) comEC 872449..874578 (+) 2130 WP_232477892.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CEQ48_RS09635 (CEQ48_09635) msbA 874609..876357 (+) 1749 WP_089071089.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  CEQ48_RS09640 (CEQ48_09640) lpxK 876360..877367 (+) 1008 WP_198301252.1 tetraacyldisaccharide 4'-kinase -
  CEQ48_RS09645 (CEQ48_09645) - 877348..877527 (+) 180 WP_000350068.1 Trm112 family protein -
  CEQ48_RS09650 (CEQ48_09650) kdsB 877527..878285 (+) 759 WP_089071091.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 709 a.a.        Molecular weight: 79937.38 Da        Isoelectric Point: 7.7388

>NTDB_id=238630 CEQ48_RS09630 WP_232477892.1 872449..874578(+) (comEC) [Vibrio tarriae strain 2521-89]
MGLLGYYRAGRQFLGFVVAILTIVLQGNLIRDQSNVLYQVGPDIIIKGRVDSFFTQTRYAYEGFVLIHEVNGQTLNRLMR
PRIRLSAPLLLQPNDQISFSVTLKPIVGRLNQTGFDLEAHYMAQSIIARAVVKPDTAYQIVQESDIRSSLFFKLEQLTHT
SPYQGLILALTFGERKGIDEQEWQTLRNSGLIHLVAISGLHIGIAFSVGYFLGLGMMRLHAQLLWSPFVCGALLAVLYAW
LAGFTLPTQRALIMCLLNVALVMLAFPLSALKRILLTLGAVLLWSPFASLSNSFWMSFLAVAIVLYQLASQSQRQVWWKA
LLWAQVFLVCLMAPVTAYFFGGLSVTAVLYNLVFIPWFSLVIVPALFLGLLLMVVWPSVAAAYWPWVDWTFLPLDWALQF
ADVGWWVVPSKVQGVVAASVAILLLYRFMSLKACSLLLGMIGLWWCFPSLTPLWRMDVLDVGHGLAIMIEQDERAIVYDT
GSSWPGGSYVQSVIEPMLQQRGLRQVEGVILSHLDNDHAGDWQGLAERWQPDWIRASQLGTEFMPCIRGESWQWQSLHFT
VLWPPQAVSRAYNQHSCVIRMTDPQSNHSVLLSGDVTAMGEWLLARDGALLQSDVMIVPHHGSKTSSTAEFIAKVNPKLA
IASVAKDNRWNLPNPQVVARYQAQQVEWLDTGQAGQISLFFYPDQLDWFTQRSLGWEPWYRQMLRKGVE

Nucleotide


Download         Length: 2130 bp        

>NTDB_id=238630 CEQ48_RS09630 WP_232477892.1 872449..874578(+) (comEC) [Vibrio tarriae strain 2521-89]
ATGGGTTTACTCGGTTATTACCGGGCTGGCCGTCAATTCCTTGGCTTCGTGGTTGCCATACTAACCATCGTGTTACAGGG
CAACCTTATACGAGATCAATCCAATGTGCTCTATCAAGTAGGGCCGGATATTATCATAAAAGGCCGTGTTGACAGCTTTT
TTACGCAAACTCGTTACGCTTATGAGGGTTTTGTCCTCATTCATGAGGTGAATGGACAAACCTTAAACAGATTGATGCGT
CCTCGTATACGTTTAAGTGCACCTTTACTGTTACAACCTAATGATCAGATCTCGTTTTCGGTTACCCTTAAACCGATAGT
GGGTCGTCTCAATCAAACCGGTTTTGACCTTGAAGCCCATTACATGGCGCAATCTATCATCGCACGAGCGGTGGTAAAAC
CTGACACTGCATATCAAATTGTGCAAGAGAGTGACATAAGGTCAAGTTTGTTCTTTAAGCTTGAACAACTAACACATACC
AGCCCATATCAAGGGTTGATTTTGGCCCTGACGTTTGGTGAGCGAAAAGGCATTGATGAGCAAGAGTGGCAAACCTTGCG
CAATAGCGGCTTAATTCATTTAGTGGCGATTTCGGGGCTGCACATTGGTATCGCTTTTAGCGTGGGTTATTTTCTCGGGC
TCGGCATGATGCGTCTTCATGCTCAGTTATTGTGGTCCCCTTTTGTGTGTGGGGCTTTACTGGCGGTGCTCTACGCTTGG
CTTGCCGGATTTACGTTGCCTACTCAGCGTGCATTGATCATGTGCTTACTCAATGTGGCGTTGGTCATGTTGGCTTTTCC
TCTTTCCGCGCTCAAGCGGATTCTACTCACCTTAGGCGCGGTCTTGCTTTGGTCGCCATTCGCCTCACTTTCAAACAGTT
TTTGGATGTCGTTTTTGGCGGTTGCGATTGTACTTTACCAATTAGCAAGTCAAAGCCAGCGTCAGGTATGGTGGAAAGCT
CTGCTTTGGGCGCAGGTGTTCCTCGTCTGTTTAATGGCTCCGGTCACTGCCTATTTTTTCGGTGGCTTAAGCGTAACGGC
AGTACTGTACAATTTGGTGTTTATTCCTTGGTTTTCGTTGGTGATTGTCCCAGCTTTGTTTTTGGGCCTATTACTCATGG
TGGTATGGCCCAGTGTAGCCGCCGCTTACTGGCCTTGGGTGGATTGGACGTTTTTACCGCTCGATTGGGCTTTGCAGTTT
GCCGATGTAGGCTGGTGGGTGGTACCCAGCAAAGTACAAGGTGTGGTCGCGGCGAGTGTGGCCATCCTCTTGCTTTATCG
ATTTATGAGCCTAAAAGCCTGCAGCTTATTATTGGGTATGATTGGCTTATGGTGGTGCTTTCCCTCCCTAACTCCGCTTT
GGCGAATGGACGTGCTGGATGTTGGGCATGGCTTGGCCATTATGATTGAGCAAGATGAGCGAGCGATAGTCTACGACACG
GGCAGCAGTTGGCCGGGAGGCAGTTATGTGCAAAGTGTGATTGAGCCTATGCTCCAACAGCGTGGACTGCGTCAAGTCGA
AGGGGTGATTTTAAGTCATCTTGATAATGATCATGCGGGTGATTGGCAAGGTTTAGCTGAACGCTGGCAACCCGATTGGA
TTCGCGCCAGCCAACTCGGGACAGAGTTTATGCCTTGCATCCGTGGTGAAAGCTGGCAGTGGCAATCTCTGCATTTTACG
GTGTTATGGCCACCACAAGCGGTTAGCCGAGCGTACAACCAGCATTCGTGTGTGATTCGTATGACTGATCCGCAGTCTAA
CCATTCTGTACTGCTATCCGGAGATGTCACAGCCATGGGCGAATGGCTACTCGCCCGCGATGGAGCTCTGCTGCAAAGTG
ATGTGATGATCGTGCCGCACCACGGCAGTAAGACTTCATCCACCGCAGAATTCATTGCCAAAGTGAATCCCAAGCTTGCG
ATTGCTTCTGTGGCGAAAGATAACCGCTGGAATTTGCCCAATCCGCAAGTCGTAGCACGTTATCAAGCTCAGCAAGTTGA
GTGGTTAGATACCGGACAAGCCGGGCAAATTAGTCTCTTTTTCTATCCAGATCAGTTGGATTGGTTTACCCAGCGCAGCC
TTGGCTGGGAGCCTTGGTATAGGCAGATGCTGCGTAAAGGAGTAGAATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(13-135)

Competence protein (Competence)

(170-426)

Metallo-beta-lactamase superfamily (Lactamase_B)

(461-641)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

95.769

100

0.958
  comEC Vibrio parahaemolyticus RIMD 2210633

41.573

100

0.417
  comEC Vibrio campbellii strain DS40M4

41.443

99.718

0.413

Multiple sequence alignment