Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   CFN77_RS15140 Genome accession   NZ_CP022319
Coordinates   2918788..2919429 (-) Length   213 a.a.
NCBI ID   WP_007500477.1    Uniprot ID   -
Organism   Bacillus altitudinis strain SGAir0031     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2913788..2924429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFN77_RS15105 (CFN77_15255) - 2914916..2915347 (+) 432 WP_096881799.1 Na(+)/H(+) antiporter subunit B -
  CFN77_RS15110 (CFN77_15260) - 2915347..2915688 (+) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  CFN77_RS15115 (CFN77_15265) - 2915681..2917159 (+) 1479 WP_019744043.1 Na+/H+ antiporter subunit D -
  CFN77_RS15120 (CFN77_15270) - 2917166..2917645 (+) 480 WP_008345848.1 Na+/H+ antiporter subunit E -
  CFN77_RS15125 (CFN77_15275) - 2917645..2917926 (+) 282 WP_008345849.1 Na(+)/H(+) antiporter subunit F1 -
  CFN77_RS15130 (CFN77_15280) mnhG 2917910..2918284 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  CFN77_RS15135 (CFN77_15285) - 2918375..2918764 (-) 390 WP_017358943.1 hotdog fold thioesterase -
  CFN77_RS15140 (CFN77_15290) comA 2918788..2919429 (-) 642 WP_007500477.1 response regulator transcription factor Regulator
  CFN77_RS15145 (CFN77_15295) comP 2919510..2921816 (-) 2307 WP_073412603.1 ATP-binding protein Regulator
  CFN77_RS15150 (CFN77_15300) comX 2921830..2922000 (-) 171 WP_017358941.1 competence pheromone ComX -
  CFN77_RS15155 (CFN77_15305) - 2921978..2922901 (-) 924 WP_096881800.1 polyprenyl synthetase family protein -
  CFN77_RS15160 (CFN77_15310) degQ 2923053..2923193 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  CFN77_RS15165 (CFN77_15315) - 2923699..2924052 (+) 354 WP_017367963.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24140.53 Da        Isoelectric Point: 4.5688

>NTDB_id=238329 CFN77_RS15140 WP_007500477.1 2918788..2919429(-) (comA) [Bacillus altitudinis strain SGAir0031]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEGAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=238329 CFN77_RS15140 WP_007500477.1 2918788..2919429(-) (comA) [Bacillus altitudinis strain SGAir0031]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGGCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATCTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCCAAACAAATTCTAGAAACGAATCAACAAGTGAAAATTATC
ATTTATACAGGATATGAAGTAGATGATTATTTTGAAGAGGCCATTCGAGCTGGATTGCATGGTGCAATAAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TGATTTCACAGCAACAAGAGAAGCCAGAACAGGCACAGCAGACGGATCATGAGCTGTTAACAGAGCGTGAATGTTTGATC
TTAAGAGAAGTGGAAAAAGGGTACACAAACCAAGAGATCGCCGATGTGCTTCATTTGAGCAAACGCTCGATTGAATACAG
TTTGACCTCCATCTTTAATAAGCTGAATGTTGGATCTCGAACAGAAGCGGTGTTAATTGCAAAATCGGAAAGTGTCCTGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718

Multiple sequence alignment