Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CFI11_RS10590 Genome accession   NZ_CP022303
Coordinates   2109733..2110233 (-) Length   166 a.a.
NCBI ID   WP_130405721.1    Uniprot ID   A0A4P6MIY0
Organism   Thalassococcus sp. S3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2104733..2115233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFI11_RS10565 (CFI11_10605) - 2104900..2105862 (-) 963 WP_130405711.1 site-specific tyrosine recombinase XerD -
  CFI11_RS10570 (CFI11_10610) - 2105859..2107394 (-) 1536 WP_130405713.1 hypothetical protein -
  CFI11_RS10575 (CFI11_10615) - 2107616..2108206 (+) 591 WP_130405715.1 shikimate kinase -
  CFI11_RS10580 (CFI11_10620) aroB 2108206..2109321 (+) 1116 WP_130405717.1 3-dehydroquinate synthase -
  CFI11_RS10585 (CFI11_10625) - 2109329..2109733 (-) 405 WP_130405719.1 hypothetical protein -
  CFI11_RS10590 (CFI11_10630) ssb 2109733..2110233 (-) 501 WP_130405721.1 single-stranded DNA-binding protein Machinery gene
  CFI11_RS10595 (CFI11_10635) - 2110420..2111004 (+) 585 WP_130405723.1 lytic transglycosylase domain-containing protein -
  CFI11_RS10600 (CFI11_10640) - 2111067..2111738 (-) 672 WP_130405725.1 hypothetical protein -
  CFI11_RS10605 (CFI11_10645) - 2111938..2112453 (+) 516 WP_130405727.1 hypothetical protein -
  CFI11_RS10610 (CFI11_10650) - 2112521..2113081 (-) 561 WP_130405729.1 CAP domain-containing protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 17669.33 Da        Isoelectric Point: 5.3190

>NTDB_id=238222 CFI11_RS10590 WP_130405721.1 2109733..2110233(-) (ssb) [Thalassococcus sp. S3]
MAGSVNKVILIGNLGRDPEVRTFQNGGKVCNLRIATSETWKDRNTGERRERTEWHSVAIFSEPLARVAEQYLRKGSKVYL
EGQLETRKWQDQSGQDRYSTEVVLRPYTSTLTMLDGRGEGGGGMGGGGGGYGGGQGGGYDSGPQDGGYGGGSGGGGSRDI
DDEIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=238222 CFI11_RS10590 WP_130405721.1 2109733..2110233(-) (ssb) [Thalassococcus sp. S3]
ATGGCAGGTTCGGTAAACAAGGTCATTCTGATCGGCAATCTTGGCCGCGACCCGGAGGTGCGGACCTTCCAGAATGGCGG
CAAGGTCTGCAATCTTCGTATTGCGACCTCTGAAACATGGAAAGATCGCAACACCGGAGAGCGGCGCGAGAGAACGGAAT
GGCACAGCGTGGCCATCTTCTCGGAACCGCTTGCCCGGGTGGCCGAGCAATATCTGCGCAAAGGGTCCAAAGTCTATCTC
GAAGGTCAGCTTGAGACGCGCAAATGGCAGGACCAGTCCGGTCAGGACCGCTACAGCACCGAGGTTGTCTTGCGTCCCTA
TACATCGACATTGACCATGCTCGACGGTCGCGGCGAAGGCGGCGGCGGTATGGGTGGTGGCGGCGGTGGCTATGGCGGCG
GTCAGGGCGGCGGCTATGACAGCGGACCACAGGATGGCGGCTATGGCGGGGGGTCCGGCGGGGGCGGATCGCGCGATATC
GACGATGAAATCCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P6MIY0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.571

100

0.554
  ssb Glaesserella parasuis strain SC1401

46.392

100

0.542
  ssb Neisseria meningitidis MC58

43.333

100

0.47
  ssb Neisseria gonorrhoeae MS11

43.333

100

0.47

Multiple sequence alignment