Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CFH90_RS04075 Genome accession   NZ_CP022298
Coordinates   810491..810817 (+) Length   108 a.a.
NCBI ID   WP_126035538.1    Uniprot ID   A0A3Q8XDY1
Organism   Acinetobacter johnsonii strain IC001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 805507..814418 810491..810817 within 0


Gene organization within MGE regions


Location: 805507..814418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFH90_RS04035 (CFH90_04025) - 805507..805722 (+) 216 WP_126035525.1 transcriptional regulator -
  CFH90_RS04040 (CFH90_04030) - 805726..805944 (+) 219 WP_126035526.1 helix-turn-helix domain-containing protein -
  CFH90_RS04045 (CFH90_04035) - 805947..806453 (+) 507 WP_126039152.1 Bro-N domain-containing protein -
  CFH90_RS04050 (CFH90_04040) - 806446..806814 (+) 369 WP_126035528.1 hypothetical protein -
  CFH90_RS04055 (CFH90_04045) - 806824..807135 (+) 312 WP_126035530.1 hypothetical protein -
  CFH90_RS04060 (CFH90_04050) - 807128..807529 (+) 402 WP_126035532.1 hypothetical protein -
  CFH90_RS04065 (CFH90_04055) - 807522..809639 (+) 2118 WP_126035534.1 DUF3987 domain-containing protein -
  CFH90_RS04070 (CFH90_04060) - 809942..810454 (+) 513 WP_126035536.1 hypothetical protein -
  CFH90_RS04075 (CFH90_04065) ssb 810491..810817 (+) 327 WP_126035538.1 single-stranded DNA-binding protein Machinery gene
  CFH90_RS04080 (CFH90_04070) - 810936..811982 (+) 1047 WP_126035540.1 RelA/SpoT domain-containing protein -
  CFH90_RS04085 (CFH90_04075) - 812268..812636 (-) 369 WP_126035542.1 hypothetical protein -
  CFH90_RS04090 (CFH90_04080) - 812718..813383 (-) 666 WP_126035543.1 DNA transfer protein p32 -
  CFH90_RS04095 (CFH90_04085) - 813940..814128 (-) 189 WP_126035545.1 hypothetical protein -
  CFH90_RS04100 (CFH90_04090) - 814125..814418 (-) 294 WP_126035547.1 hypothetical protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12195.84 Da        Isoelectric Point: 10.1807

>NTDB_id=238193 CFH90_RS04075 WP_126035538.1 810491..810817(+) (ssb) [Acinetobacter johnsonii strain IC001]
MANLNRVTVMGVLGRDPETKQFPNGGSVTTFSVATTEFWKDKTTGERKEATEWHRIATSNRLAEIASKYLKKGGKVYIEG
SLRTRKYKDKSGSEKEITEIRADELQLL

Nucleotide


Download         Length: 327 bp        

>NTDB_id=238193 CFH90_RS04075 WP_126035538.1 810491..810817(+) (ssb) [Acinetobacter johnsonii strain IC001]
ATGGCGAACTTAAACAGAGTGACAGTAATGGGCGTTCTAGGCCGTGACCCTGAAACCAAACAATTTCCCAACGGTGGCAG
CGTTACAACATTCAGCGTTGCAACTACCGAGTTCTGGAAAGACAAGACCACAGGCGAGCGCAAAGAGGCCACAGAATGGC
ACAGAATCGCCACCAGCAACCGATTAGCGGAGATTGCCAGTAAGTACCTCAAGAAAGGCGGAAAGGTTTATATCGAAGGC
TCATTGCGTACTAGGAAGTATAAGGACAAAAGCGGATCGGAAAAGGAAATAACCGAGATTCGAGCAGATGAGCTGCAATT
GCTATGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q8XDY1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

54.63

100

0.546
  ssb Neisseria gonorrhoeae MS11

51.887

98.148

0.509
  ssb Neisseria meningitidis MC58

51.887

98.148

0.509
  ssb Vibrio cholerae strain A1552

51.546

89.815

0.463

Multiple sequence alignment