Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CFI10_RS01375 | Genome accession | NZ_CP022297 |
| Coordinates | 277716..278261 (+) | Length | 181 a.a. |
| NCBI ID | WP_091826440.1 | Uniprot ID | A0A1H4E3F1 |
| Organism | Marinobacterium iners strain IC961 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 272716..283261
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CFI10_RS01360 (CFI10_01350) | rpoA | 273196..274200 (+) | 1005 | WP_091826434.1 | DNA-directed RNA polymerase subunit alpha | - |
| CFI10_RS01365 (CFI10_01355) | rplQ | 274239..274634 (+) | 396 | WP_091826436.1 | 50S ribosomal protein L17 | - |
| CFI10_RS01370 (CFI10_01360) | uvrA | 274742..277570 (-) | 2829 | WP_206838317.1 | excinuclease ABC subunit UvrA | - |
| CFI10_RS01375 (CFI10_01365) | ssb | 277716..278261 (+) | 546 | WP_091826440.1 | single-stranded DNA-binding protein | Machinery gene |
| CFI10_RS01380 (CFI10_01370) | rfbD | 278430..279356 (+) | 927 | WP_242530076.1 | dTDP-4-dehydrorhamnose reductase | - |
| CFI10_RS01385 (CFI10_01375) | - | 279381..279752 (-) | 372 | WP_175527636.1 | SirB2 family protein | - |
| CFI10_RS01390 (CFI10_01380) | - | 279956..281077 (+) | 1122 | WP_206838335.1 | 1-acyl-sn-glycerol-3-phosphate acyltransferase | - |
| CFI10_RS01395 (CFI10_01385) | - | 281077..281823 (+) | 747 | WP_242530077.1 | lysophospholipid acyltransferase family protein | - |
| CFI10_RS01400 (CFI10_01390) | fabB | 281908..283125 (-) | 1218 | WP_206838349.1 | beta-ketoacyl-ACP synthase I | - |
Sequence
Protein
Download Length: 181 a.a. Molecular weight: 19964.95 Da Isoelectric Point: 4.7790
>NTDB_id=238159 CFI10_RS01375 WP_091826440.1 277716..278261(+) (ssb) [Marinobacterium iners strain IC961]
MARGINKVILIGNLGADPEVRYMPSGNAVTNVNLATSDSWKDKQSGQMQERTEWHRVVFFNRLAEIAGEYLRKGSKVYIE
GSLRTRKWQGQDGQDRYTTEIVASEMQMLDGRGGEGGGGYQQPSQGGGYAPQGGDMGYGQPQQYNQAPPQQAPRQQPAQQ
PAQQPQQPAPGFDDFDDDIPF
MARGINKVILIGNLGADPEVRYMPSGNAVTNVNLATSDSWKDKQSGQMQERTEWHRVVFFNRLAEIAGEYLRKGSKVYIE
GSLRTRKWQGQDGQDRYTTEIVASEMQMLDGRGGEGGGGYQQPSQGGGYAPQGGDMGYGQPQQYNQAPPQQAPRQQPAQQ
PAQQPQQPAPGFDDFDDDIPF
Nucleotide
Download Length: 546 bp
>NTDB_id=238159 CFI10_RS01375 WP_091826440.1 277716..278261(+) (ssb) [Marinobacterium iners strain IC961]
ATGGCGCGCGGTATCAATAAAGTAATTCTGATCGGTAATCTGGGAGCTGATCCCGAAGTACGTTACATGCCATCTGGCAA
TGCGGTCACCAACGTGAACCTTGCCACCAGCGATAGCTGGAAAGACAAACAGAGCGGACAGATGCAGGAGCGTACCGAGT
GGCATCGGGTCGTATTCTTCAACCGTCTGGCTGAAATTGCGGGCGAGTATCTGCGCAAGGGTTCAAAGGTTTACATTGAG
GGCTCCCTGCGTACCCGCAAGTGGCAGGGACAGGATGGCCAGGATCGCTACACGACTGAAATTGTAGCCAGCGAGATGCA
GATGCTGGATGGACGCGGTGGTGAAGGGGGTGGTGGTTACCAGCAACCTTCACAGGGTGGCGGTTATGCACCTCAGGGCG
GCGACATGGGCTATGGTCAGCCACAACAATACAATCAGGCACCGCCACAGCAGGCTCCGCGTCAGCAGCCGGCACAACAG
CCTGCGCAACAACCTCAGCAGCCAGCCCCGGGTTTTGATGACTTTGATGATGACATCCCGTTCTGA
ATGGCGCGCGGTATCAATAAAGTAATTCTGATCGGTAATCTGGGAGCTGATCCCGAAGTACGTTACATGCCATCTGGCAA
TGCGGTCACCAACGTGAACCTTGCCACCAGCGATAGCTGGAAAGACAAACAGAGCGGACAGATGCAGGAGCGTACCGAGT
GGCATCGGGTCGTATTCTTCAACCGTCTGGCTGAAATTGCGGGCGAGTATCTGCGCAAGGGTTCAAAGGTTTACATTGAG
GGCTCCCTGCGTACCCGCAAGTGGCAGGGACAGGATGGCCAGGATCGCTACACGACTGAAATTGTAGCCAGCGAGATGCA
GATGCTGGATGGACGCGGTGGTGAAGGGGGTGGTGGTTACCAGCAACCTTCACAGGGTGGCGGTTATGCACCTCAGGGCG
GCGACATGGGCTATGGTCAGCCACAACAATACAATCAGGCACCGCCACAGCAGGCTCCGCGTCAGCAGCCGGCACAACAG
CCTGCGCAACAACCTCAGCAGCCAGCCCCGGGTTTTGATGACTTTGATGATGACATCCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
58.602 |
100 |
0.602 |
| ssb | Glaesserella parasuis strain SC1401 |
53.804 |
100 |
0.547 |
| ssb | Neisseria gonorrhoeae MS11 |
49.733 |
100 |
0.514 |
| ssb | Neisseria meningitidis MC58 |
48.148 |
100 |
0.503 |