Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   Aba7804_RS02930 Genome accession   NZ_CP022283
Coordinates   611898..612638 (+) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain 7804     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 606898..617638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Aba7804_RS02915 (Aba7804_02915) ponA 607485..610040 (-) 2556 WP_000736683.1 penicillin-binding protein PBP1a -
  Aba7804_RS02920 (Aba7804_02920) pilM 610202..611260 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  Aba7804_RS02925 (Aba7804_02925) pilN 611260..611901 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  Aba7804_RS02930 (Aba7804_02930) pilO 611898..612638 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  Aba7804_RS02935 (Aba7804_02935) pilP 612649..613176 (+) 528 WP_000695061.1 pilus assembly protein PilP Machinery gene
  Aba7804_RS02940 (Aba7804_02940) pilQ 613239..615404 (+) 2166 WP_001017029.1 type IV pilus secretin PilQ family protein Machinery gene
  Aba7804_RS02945 (Aba7804_02945) aroK 615416..615984 (+) 569 Protein_559 shikimate kinase AroK -
  Aba7804_RS02950 (Aba7804_02950) aroB 616013..617095 (+) 1083 WP_001194249.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=237921 Aba7804_RS02930 WP_000076101.1 611898..612638(+) (pilO) [Acinetobacter baumannii strain 7804]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=237921 Aba7804_RS02930 WP_000076101.1 611898..612638(+) (pilO) [Acinetobacter baumannii strain 7804]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTGCCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTAGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACTGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683

Multiple sequence alignment