Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   BG910_RS04295 Genome accession   NZ_CP022278
Coordinates   887191..887496 (-) Length   101 a.a.
NCBI ID   WP_089035781.1    Uniprot ID   -
Organism   Neisseria chenwenguii strain 10023     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 882191..892496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BG910_RS04280 (BG910_04275) - 882727..883371 (+) 645 WP_089035779.1 hypothetical protein -
  BG910_RS12160 - 883397..883558 (+) 162 WP_157694022.1 hypothetical protein -
  BG910_RS04285 (BG910_04280) leuS 883746..886385 (+) 2640 WP_089037134.1 leucine--tRNA ligase -
  BG910_RS04290 (BG910_04285) comP 886510..886980 (-) 471 WP_089035780.1 type IV pilin protein Machinery gene
  BG910_RS04295 (BG910_04290) comE 887191..887496 (-) 306 WP_089035781.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 10266.15 Da        Isoelectric Point: 10.6985

>NTDB_id=237844 BG910_RS04295 WP_089035781.1 887191..887496(-) (comE) [Neisseria chenwenguii strain 10023]
MKKFIFAAVAALGTALSLAAVNINTAGEAELETLPGVGPAKAKAIVAYRSQHGQFKSVDELKNVKGIGEGIFAKLKAEVA
VGGAPAKKAAVPAVKQPVVKK

Nucleotide


Download         Length: 306 bp        

>NTDB_id=237844 BG910_RS04295 WP_089035781.1 887191..887496(-) (comE) [Neisseria chenwenguii strain 10023]
ATGAAAAAATTCATTTTTGCTGCGGTAGCGGCATTGGGTACAGCGCTGTCGCTGGCGGCAGTCAACATCAATACTGCGGG
TGAGGCCGAGCTGGAAACGCTGCCGGGTGTGGGTCCGGCCAAAGCGAAGGCGATTGTGGCCTACCGTAGTCAGCACGGAC
AGTTTAAGAGTGTGGACGAGCTGAAGAACGTCAAAGGCATCGGCGAAGGCATTTTTGCGAAGCTGAAGGCCGAGGTGGCG
GTTGGCGGTGCGCCTGCGAAGAAGGCAGCCGTACCGGCAGTGAAACAGCCGGTGGTGAAGAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

56

99.01

0.554
  comE Neisseria gonorrhoeae MS11

56

99.01

0.554
  comE Neisseria gonorrhoeae MS11

56

99.01

0.554
  comE Neisseria gonorrhoeae MS11

56

99.01

0.554
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.383

80.198

0.396
  comEA Vibrio parahaemolyticus RIMD 2210633

43.023

85.149

0.366

Multiple sequence alignment