Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   BG910_RS02965 Genome accession   NZ_CP022278
Coordinates   608885..610993 (+) Length   702 a.a.
NCBI ID   WP_089035560.1    Uniprot ID   A0A220S032
Organism   Neisseria chenwenguii strain 10023     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 603885..615993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BG910_RS02945 (BG910_02940) pilM 605880..606977 (+) 1098 WP_199720928.1 type IV pilus assembly protein PilM -
  BG910_RS02950 (BG910_02945) pilN 606979..607605 (+) 627 WP_089035557.1 PilN domain-containing protein Machinery gene
  BG910_RS02955 (BG910_02950) - 607609..608280 (+) 672 WP_089035558.1 type 4a pilus biogenesis protein PilO -
  BG910_RS02960 (BG910_02955) pilP 608301..608867 (+) 567 WP_089035559.1 pilus assembly protein PilP Machinery gene
  BG910_RS02965 (BG910_02960) pilQ 608885..610993 (+) 2109 WP_089035560.1 type IV pilus secretin PilQ Machinery gene
  BG910_RS02970 (BG910_02965) - 611115..611651 (+) 537 WP_408633778.1 shikimate kinase -
  BG910_RS02975 (BG910_02970) aroB 612105..613202 (+) 1098 WP_089035561.1 3-dehydroquinate synthase -
  BG910_RS02985 (BG910_02980) - 613638..614480 (+) 843 WP_089035563.1 class II glutamine amidotransferase -
  BG910_RS02990 (BG910_02985) nrdR 614592..615056 (+) 465 WP_089037110.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 702 a.a.        Molecular weight: 75776.70 Da        Isoelectric Point: 9.8815

>NTDB_id=237839 BG910_RS02965 WP_089035560.1 608885..610993(+) (pilQ) [Neisseria chenwenguii strain 10023]
MKTKYATKLLAGLGIAAAVQTAFAGNITDINVSTLPDNQKIVKIRFDRDVTSPSGFVTTTPSRIALDFANTNIKLAQPVL
EYADPLLSRITAAQNNKRARILLGLNKAGQYNTEIRGNEVWVFVNESADQTAAAGSYVADNSQVRASKTSQAVSSANIDF
RKGSRNSGIIELSAAGFSGQPDIKQQRDRVVITLKNHPLPTQAQRSLDVGDFNTPVQNVTLKRIGNATQLIIRNNGNWDI
NTKAVSGRYTFEISPKAAATETSGLNSNANKSFKGRKISLDFQDVEVRTILQILAKESGVNIVASDTVNGKMTLSLKDVP
WDQALDLVMQARNLDMRRQGNIINIAPRDELLAKDKAFLQAEKEISELGPLYSQTFQLKYKNVEEFRKILRLDDSGSSSS
NGRNTLLSERGSALIDPATNTLIITDNRKVIEKFRKLIDELDVATRQVMVEARIVEAEDGFSRNLGVKFGYTGRSNKAGG
ENTGNGWGSSLSNAHSAAGGSFNLSPNISLPVASATSSIALVRSVASGALGLELSASESQEKSKTLSNPRVLTQDRKEAV
IESGSEIPYQEASSSGATSVSFKKAVLGLTVTPNITPDGQIIMSVKITKDSPQDCTVDGLVTKCISTKNLNTQAMVEDGG
TLIIGGIYEEENGTITNKVPLLGDIPVVGNLFKSRGRSDKKRELLVFITPRIMDSAGSNLRY

Nucleotide


Download         Length: 2109 bp        

>NTDB_id=237839 BG910_RS02965 WP_089035560.1 608885..610993(+) (pilQ) [Neisseria chenwenguii strain 10023]
ATGAAAACCAAATACGCAACTAAACTCTTGGCAGGCTTGGGCATTGCAGCAGCCGTTCAGACGGCCTTTGCAGGCAACAT
TACCGACATCAACGTCTCCACCCTGCCCGACAACCAAAAAATCGTCAAAATCCGCTTTGATCGCGATGTGACCAGCCCGA
GCGGCTTCGTCACCACCACGCCCTCGCGCATCGCACTGGATTTTGCCAACACCAACATCAAATTGGCGCAACCCGTTTTA
GAATACGCCGACCCGCTTTTGAGCCGGATTACCGCCGCACAAAACAACAAGCGCGCACGCATCCTGCTGGGTCTGAACAA
AGCCGGCCAATACAATACCGAAATCCGCGGTAACGAAGTATGGGTATTCGTCAACGAATCCGCCGACCAAACTGCCGCCG
CAGGCAGCTACGTTGCCGACAATTCGCAAGTACGCGCCAGCAAAACCAGCCAAGCCGTTTCCTCTGCGAATATCGACTTC
CGCAAAGGTTCGCGCAATTCGGGCATCATCGAGCTTTCCGCCGCAGGCTTCTCCGGCCAGCCCGACATCAAACAACAGCG
CGACCGCGTCGTGATTACGCTGAAAAACCACCCCCTGCCCACCCAAGCGCAGCGCAGCTTGGACGTCGGTGATTTCAACA
CGCCCGTGCAAAACGTAACCCTCAAACGCATCGGCAACGCCACCCAGCTGATTATCCGCAACAACGGCAACTGGGACATC
AACACCAAAGCCGTATCCGGCCGCTACACCTTTGAAATTTCGCCAAAAGCCGCCGCAACCGAAACCAGCGGTCTGAACAG
CAACGCCAACAAATCCTTCAAAGGACGCAAAATCTCCTTAGACTTCCAAGATGTCGAAGTCCGCACCATTTTGCAGATTC
TGGCCAAAGAATCAGGCGTCAACATCGTCGCCAGCGATACCGTCAACGGCAAAATGACTCTGTCGCTGAAAGATGTACCC
TGGGATCAGGCTTTGGATTTAGTGATGCAGGCACGCAATCTCGATATGCGCCGCCAAGGCAACATCATCAACATCGCCCC
GCGCGATGAACTTTTAGCCAAAGACAAAGCATTCCTCCAAGCCGAAAAAGAAATTTCCGAGCTGGGCCCGCTCTACTCGC
AAACCTTCCAACTGAAATACAAAAACGTCGAAGAATTCCGCAAAATCCTGCGTTTGGACGACAGCGGCAGTTCTAGCTCC
AACGGTCGTAACACTTTATTGAGCGAACGCGGCAGCGCCCTGATCGATCCGGCTACCAACACTTTGATCATCACCGACAA
CCGCAAAGTGATTGAAAAATTCCGCAAACTGATCGACGAATTGGACGTCGCCACCCGTCAAGTGATGGTAGAAGCGCGTA
TCGTTGAAGCAGAAGACGGGTTCTCACGCAATTTGGGTGTAAAATTTGGTTATACTGGTCGAAGCAATAAAGCCGGCGGT
GAAAACACTGGCAATGGTTGGGGCTCGAGCCTGTCAAATGCCCACAGTGCGGCAGGCGGATCATTTAACTTGAGCCCCAA
CATCAGCCTGCCCGTTGCCAGTGCAACCTCATCCATCGCCTTGGTCCGTTCGGTTGCCTCCGGTGCGTTGGGCTTGGAAC
TGTCCGCTTCCGAATCGCAAGAAAAGAGCAAAACCCTTTCCAACCCGCGCGTTCTGACCCAAGACCGCAAAGAAGCCGTC
ATCGAATCCGGCTCGGAAATTCCTTACCAAGAAGCATCTTCCAGCGGCGCAACCTCGGTCAGCTTCAAAAAAGCCGTGTT
GGGTCTGACCGTCACCCCGAATATCACCCCCGACGGTCAGATTATCATGTCGGTAAAAATCACCAAAGACTCGCCGCAGG
ATTGTACGGTTGACGGACTGGTTACCAAATGTATCAGCACCAAAAACCTGAATACCCAAGCTATGGTGGAAGACGGTGGC
ACGTTGATTATCGGCGGCATTTACGAAGAGGAAAACGGTACCATCACCAACAAAGTACCGCTCTTGGGTGACATCCCCGT
CGTCGGCAACCTGTTTAAATCCCGCGGCCGCAGCGATAAAAAGCGTGAACTGCTGGTATTCATTACCCCGCGCATCATGG
ACAGCGCCGGCAGCAACTTGCGCTACTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(38-115)

Bacterial type II/III secretion system short domain (Secretin_N)

(374-447)

Secretin and TonB N terminus short domain (STN)

(300-347)

Bacterial type II and III secretion system protein (Secretin)

(537-694)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A220S032

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria gonorrhoeae strain FA1090

64.159

100

0.668
  pilQ Neisseria meningitidis MC58

68.297

78.632

0.537
  pilQ Neisseria meningitidis M1080

68.297

78.632

0.537
  pilQ Pseudomonas aeruginosa PAK

36.061

100

0.37

Multiple sequence alignment