Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BG910_RS01230 Genome accession   NZ_CP022278
Coordinates   262660..263184 (+) Length   174 a.a.
NCBI ID   WP_089035278.1    Uniprot ID   A0A220S003
Organism   Neisseria chenwenguii strain 10023     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 257660..268184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BG910_RS01215 (BG910_01215) ppx 258740..260245 (-) 1506 WP_089037075.1 exopolyphosphatase -
  BG910_RS01220 (BG910_01220) - 260442..261065 (+) 624 WP_089035276.1 lytic transglycosylase domain-containing protein -
  BG910_RS01225 (BG910_01225) - 261274..262656 (+) 1383 WP_089035277.1 MFS transporter -
  BG910_RS01230 (BG910_01230) ssb 262660..263184 (+) 525 WP_089035278.1 single-stranded DNA-binding protein Machinery gene
  BG910_RS01235 (BG910_01235) - 263444..263710 (-) 267 WP_089037076.1 DUF1040 family protein -
  BG910_RS01240 (BG910_01240) ung 263841..264500 (+) 660 WP_089035279.1 uracil-DNA glycosylase -
  BG910_RS01245 (BG910_01245) - 264568..265074 (-) 507 WP_089035280.1 hemerythrin domain-containing protein -
  BG910_RS01250 (BG910_01250) greB 265192..265683 (-) 492 WP_089035281.1 transcription elongation factor GreB -
  BG910_RS01255 (BG910_01255) - 265701..265931 (-) 231 WP_089035282.1 hypothetical protein -
  BG910_RS01260 (BG910_01260) - 266082..266507 (+) 426 WP_089035283.1 MarR family winged helix-turn-helix transcriptional regulator -
  BG910_RS01265 (BG910_01265) - 266536..266994 (+) 459 WP_089035284.1 bacterioferritin -
  BG910_RS01270 (BG910_01270) - 267005..267796 (+) 792 WP_089035285.1 HpcH/HpaI aldolase/citrate lyase family protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19363.42 Da        Isoelectric Point: 5.3039

>NTDB_id=237832 BG910_RS01230 WP_089035278.1 262660..263184(+) (ssb) [Neisseria chenwenguii strain 10023]
MSSLNKVILIGNLGRDPEVRYMPNGEPVCNFSIATSETWNDRNSGQRQERTEWHNITMYRRLAEIAGQYLKKGSSVYIEG
RIQSRKYQGKDGIERTAYEIIANEMKMLGSRQSGGGASYDEGYQQGGYQQSAPQQQYQNAAPAYNQEPPAAPARRAPAAA
PAVPVDDIDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=237832 BG910_RS01230 WP_089035278.1 262660..263184(+) (ssb) [Neisseria chenwenguii strain 10023]
ATGTCATCGTTAAACAAAGTCATCTTAATCGGCAACTTGGGGCGCGACCCCGAAGTACGCTACATGCCCAACGGCGAACC
CGTGTGCAACTTCAGCATCGCCACCAGCGAAACTTGGAACGACCGCAACAGCGGCCAGCGCCAAGAGCGCACCGAGTGGC
ACAACATCACTATGTACCGCCGCCTGGCCGAAATCGCCGGGCAATATCTGAAAAAAGGCAGTTCCGTCTATATCGAAGGC
CGCATCCAAAGCCGTAAATACCAAGGCAAAGACGGCATCGAGCGCACCGCCTACGAAATCATCGCCAACGAAATGAAAAT
GCTCGGCAGCCGTCAAAGCGGCGGCGGCGCAAGCTACGACGAAGGTTACCAGCAAGGCGGCTATCAGCAGAGCGCACCGC
AGCAGCAATACCAAAACGCCGCACCCGCCTACAACCAAGAGCCGCCCGCCGCACCCGCCCGCCGCGCCCCTGCCGCCGCG
CCTGCCGTACCGGTGGACGACATCGACGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A220S003

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

76.836

100

0.782
  ssb Neisseria meningitidis MC58

75.568

100

0.764
  ssb Vibrio cholerae strain A1552

47.396

100

0.523
  ssb Glaesserella parasuis strain SC1401

45.405

100

0.483

Multiple sequence alignment