Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CFF01_RS02560 Genome accession   NZ_CP022272
Coordinates   572802..573470 (+) Length   222 a.a.
NCBI ID   WP_088903760.1    Uniprot ID   A0AAC9TY18
Organism   Shewanella marisflavi strain EP1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 567802..578470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFF01_RS02550 (CFF01_02550) uvrA 568332..571157 (-) 2826 WP_088903759.1 excinuclease ABC subunit UvrA -
  CFF01_RS02555 (CFF01_02555) - 571360..572727 (+) 1368 WP_033538789.1 MFS transporter -
  CFF01_RS02560 (CFF01_02560) ssb 572802..573470 (+) 669 WP_088903760.1 single-stranded DNA-binding protein Machinery gene
  CFF01_RS02565 (CFF01_02565) dusA 573678..574667 (+) 990 WP_088903761.1 tRNA dihydrouridine(20/20a) synthase DusA -
  CFF01_RS02570 (CFF01_02570) - 574965..575243 (+) 279 WP_088903762.1 hypothetical protein -
  CFF01_RS02575 (CFF01_02575) - 575406..575612 (+) 207 WP_033538785.1 PspC domain-containing protein -
  CFF01_RS02580 (CFF01_02580) - 575631..575990 (+) 360 WP_088903763.1 hypothetical protein -
  CFF01_RS02585 (CFF01_02585) - 576004..576741 (-) 738 WP_088903764.1 enoyl-CoA hydratase -
  CFF01_RS02590 (CFF01_02590) - 576791..577258 (+) 468 WP_033538782.1 copper chaperone PCu(A)C -
  CFF01_RS02595 (CFF01_02595) - 577271..578242 (+) 972 WP_033538781.1 DUF2333 family protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24221.61 Da        Isoelectric Point: 5.9284

>NTDB_id=237786 CFF01_RS02560 WP_088903760.1 572802..573470(+) (ssb) [Shewanella marisflavi strain EP1]
MASRGVNKVILVGNLGKDPEVRYMPNGNAVANFTVATSESWKDQQGQMQERTEWHNIVMYRRLAEIAGEYLKKGSKVYLE
GKLQTSKWQDQQTGQDRYKTEINVNEMQMLDSRAQGQGGQGGQQGYGAPQQNQYAPQQSAPAPRAQPQSQSQPQPSGAAP
QGGYGAPQQAAPQQGYGAPAAPAYAPKPQAAPQQAPQQRPAPQPQQNFTPDLDDGWDDDIPF

Nucleotide


Download         Length: 669 bp        

>NTDB_id=237786 CFF01_RS02560 WP_088903760.1 572802..573470(+) (ssb) [Shewanella marisflavi strain EP1]
ATGGCCAGTCGTGGTGTCAATAAGGTAATTTTGGTCGGTAACTTAGGGAAAGATCCCGAGGTTCGTTACATGCCAAACGG
CAACGCCGTAGCCAACTTTACAGTGGCGACCAGTGAGTCTTGGAAAGACCAACAAGGTCAGATGCAAGAACGTACAGAGT
GGCACAACATTGTAATGTACCGTCGTCTTGCTGAGATCGCCGGTGAGTACCTGAAGAAGGGCTCAAAAGTTTATCTTGAA
GGCAAGCTGCAGACCAGCAAGTGGCAAGATCAGCAGACAGGCCAAGATCGCTATAAGACAGAGATCAATGTCAACGAGAT
GCAGATGCTTGATAGCCGTGCTCAAGGTCAAGGCGGTCAAGGTGGTCAGCAAGGTTATGGTGCACCGCAGCAGAACCAGT
ATGCGCCTCAGCAATCGGCTCCAGCGCCACGTGCACAACCACAATCACAATCACAACCACAGCCATCGGGCGCAGCGCCT
CAGGGTGGATATGGCGCGCCGCAGCAAGCGGCACCACAACAAGGTTATGGCGCACCAGCGGCACCAGCCTACGCTCCTAA
GCCACAGGCGGCGCCGCAACAAGCACCGCAGCAACGTCCTGCGCCGCAGCCTCAGCAAAACTTCACGCCGGATCTGGATG
ATGGCTGGGACGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.78

100

0.509
  ssb Glaesserella parasuis strain SC1401

48.198

100

0.482
  ssb Neisseria meningitidis MC58

48.387

97.748

0.473
  ssb Neisseria gonorrhoeae MS11

47.465

97.748

0.464

Multiple sequence alignment