Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   XcvCFBP7113P_RS16470 Genome accession   NZ_CP022270
Coordinates   3699654..3701390 (-) Length   578 a.a.
NCBI ID   WP_089096622.1    Uniprot ID   -
Organism   Xanthomonas citri pv. vignicola strain CFBP7113     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3694654..3706390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XcvCFBP7113P_RS16455 (XcvCFBP7113P_16445) - 3695868..3697481 (+) 1614 WP_089095831.1 HAMP domain-containing sensor histidine kinase -
  XcvCFBP7113P_RS16460 (XcvCFBP7113P_16450) pilR 3697751..3699205 (+) 1455 WP_170922314.1 sigma-54 dependent transcriptional regulator Regulator
  XcvCFBP7113P_RS16470 (XcvCFBP7113P_16460) pilB 3699654..3701390 (-) 1737 WP_089096622.1 type IV-A pilus assembly ATPase PilB Machinery gene
  XcvCFBP7113P_RS16475 (XcvCFBP7113P_16465) - 3701455..3701910 (-) 456 WP_089095832.1 pilin -
  XcvCFBP7113P_RS16480 (XcvCFBP7113P_16470) - 3702020..3702460 (-) 441 WP_015471735.1 pilin -
  XcvCFBP7113P_RS16485 (XcvCFBP7113P_16475) pilC 3702813..3704069 (+) 1257 WP_040107659.1 type II secretion system F family protein Machinery gene
  XcvCFBP7113P_RS16490 (XcvCFBP7113P_16480) - 3704076..3704939 (+) 864 WP_089095833.1 A24 family peptidase -
  XcvCFBP7113P_RS16495 (XcvCFBP7113P_16485) coaE 3704953..3705489 (+) 537 Protein_3092 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 62528.66 Da        Isoelectric Point: 5.6006

>NTDB_id=237770 XcvCFBP7113P_RS16470 WP_089096622.1 3699654..3701390(-) (pilB) [Xanthomonas citri pv. vignicola strain CFBP7113]
MNSVVTANLVGITGIARRLVQDGAVEEAVARSAMDQASAAKIPLPQWFAEKKLVTASQLAAANAVEFGMPLLDVSAFDAS
QNAVKLVSEELLQKHQVLPLFKRGNRLFVGVSNPTQTRALDDIKFHTNLVVEPILVDEDQIRRTLEQWQASNAALGSALG
DDEEGMGDLDVSAGDEDMGAGGDSGVDAKGDDTPVVKFVNKVLVDAIRRGASDIHFEPYEDDYRVRLRIDGLLKNVAKAP
VKLNQRIAARLKVMSQLDIAEKRVPQDGRIKLNLSKTKQIDFRVSTLPTLFGEKVVLRILDGSAAKLGIDKLGYEADQQK
LFLEAIHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNNKRGMTFAAALRSFLRQDP
DIIMVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCNNCKRKSTLP
DNALLAEGFTPAQLAAGIELYEAVGCDECTEGYKGRTGIYQVMPMTDEIGAIVLEGGNAMQIAEAAQAIGIRDLRQSALM
KAAHGVTSLAEINRVTKD

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=237770 XcvCFBP7113P_RS16470 WP_089096622.1 3699654..3701390(-) (pilB) [Xanthomonas citri pv. vignicola strain CFBP7113]
ATGAATAGCGTCGTGACCGCAAACTTGGTTGGAATAACGGGCATCGCGCGTCGTCTGGTGCAAGACGGTGCGGTCGAAGA
AGCAGTTGCGCGATCTGCGATGGATCAGGCATCTGCGGCAAAGATTCCTCTACCGCAATGGTTTGCTGAGAAGAAGTTGG
TCACTGCTTCCCAGCTCGCCGCTGCTAATGCGGTCGAGTTCGGCATGCCACTGCTGGATGTGTCGGCGTTCGACGCCAGC
CAAAACGCGGTCAAGCTGGTAAGTGAGGAACTACTTCAGAAGCACCAAGTGCTACCGCTGTTCAAGCGCGGCAACCGGCT
GTTCGTGGGGGTGAGCAATCCGACCCAGACCCGGGCGCTGGATGACATCAAGTTTCACACGAACTTGGTGGTCGAGCCCA
TCCTTGTGGATGAAGATCAGATCCGTCGCACCCTGGAGCAATGGCAGGCCAGCAATGCTGCGCTGGGCTCCGCACTCGGT
GACGACGAGGAGGGCATGGGGGATCTGGACGTTTCGGCTGGCGACGAGGACATGGGCGCCGGCGGGGATTCCGGGGTCGA
TGCCAAGGGCGACGACACGCCGGTGGTGAAGTTCGTCAACAAGGTGCTGGTGGATGCGATCCGGCGGGGAGCGTCGGACA
TCCATTTCGAGCCGTATGAAGACGACTACCGGGTGCGCTTGCGCATCGATGGCCTGTTGAAGAATGTGGCCAAGGCGCCG
GTGAAGCTGAACCAGCGCATCGCGGCGCGCTTGAAGGTAATGTCGCAGCTGGATATCGCCGAGAAGCGGGTGCCGCAGGA
CGGGCGCATCAAGCTCAACCTGTCCAAGACCAAGCAGATCGACTTCCGTGTCAGCACCTTGCCGACCCTGTTCGGCGAGA
AGGTGGTGCTGCGTATCCTGGACGGCAGCGCGGCCAAGCTGGGCATCGACAAGCTGGGCTATGAGGCGGACCAGCAGAAG
TTGTTCCTGGAGGCGATCCACAAGCCCTATGGCATGGTGCTGGTGACCGGGCCGACCGGCTCGGGCAAGACGGTGTCGTT
GTATACGGCGCTGGGAATTCTCAACGACGAGACGCGCAATATCTCCACCGCGGAGGACCCGGTCGAAATCCGCTTGCCTG
GCGTCAATCAGGTACAGCAGAACAACAAGCGTGGCATGACCTTCGCCGCGGCTTTGCGCTCGTTCCTGCGCCAGGACCCG
GACATCATCATGGTCGGCGAAATCCGTGACCTGGAGACTGCCGAGATTGCGATCAAGGCGGCGCAGACGGGTCACATGGT
GCTGTCGACGTTGCACACCAACGATGCGCCGCAGACCATCGCACGTCTGATGAACATGGGCATCGCGCCCTACAACATCA
CCTCGTCGGTGACCCTTGTCATCGCGCAGCGGCTGGCGCGGCGGTTGTGCAACAACTGCAAGCGCAAGTCGACGCTGCCT
GATAACGCATTGCTGGCCGAAGGATTCACGCCTGCCCAGCTTGCCGCCGGGATCGAGCTGTATGAGGCGGTCGGTTGCGA
TGAGTGCACCGAAGGCTACAAGGGGCGTACCGGTATCTACCAGGTGATGCCGATGACCGACGAAATCGGCGCGATCGTGC
TGGAGGGCGGCAACGCGATGCAGATCGCCGAGGCCGCGCAGGCGATCGGTATCCGCGATTTGCGGCAGTCGGCGTTGATG
AAGGCTGCGCACGGGGTGACCAGTCTGGCGGAGATCAATCGAGTGACGAAGGACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(49-153)

Type II/IV secretion system protein (T2SSE)

(201-468)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baumannii D1279779

56.514

98.27

0.555
  pilB Acinetobacter baylyi ADP1

55.634

98.27

0.547
  pilB Legionella pneumophila strain ERS1305867

52.021

98.443

0.512
  pilB Vibrio cholerae strain A1552

49.132

99.654

0.49
  pilF Neisseria gonorrhoeae MS11

48.944

98.27

0.481
  pilB Vibrio parahaemolyticus RIMD 2210633

47.143

96.886

0.457
  pilB Vibrio campbellii strain DS40M4

45.694

98.443

0.45

Multiple sequence alignment