Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   XcvCFBP7112P_RS17020 Genome accession   NZ_CP022267
Coordinates   3850969..3852027 (-) Length   352 a.a.
NCBI ID   WP_089142081.1    Uniprot ID   -
Organism   Xanthomonas citri pv. vignicola strain CFBP7112     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3845969..3857027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XcvCFBP7112P_RS17000 (XcvCFBP7112P_17030) - 3847080..3848975 (-) 1896 WP_057659668.1 type IV pilus secretin PilQ family protein -
  XcvCFBP7112P_RS17005 (XcvCFBP7112P_17035) - 3848995..3849528 (-) 534 WP_057659671.1 pilus assembly protein PilP -
  XcvCFBP7112P_RS17010 (XcvCFBP7112P_17040) - 3849525..3850190 (-) 666 WP_007967621.1 type 4a pilus biogenesis protein PilO -
  XcvCFBP7112P_RS17015 (XcvCFBP7112P_17045) - 3850187..3850969 (-) 783 WP_007974441.1 PilN domain-containing protein -
  XcvCFBP7112P_RS17020 (XcvCFBP7112P_17050) comM 3850969..3852027 (-) 1059 WP_089142081.1 pilus assembly protein PilM Machinery gene
  XcvCFBP7112P_RS17025 (XcvCFBP7112P_17055) - 3852240..3854666 (+) 2427 WP_162808442.1 penicillin-binding protein 1A -
  XcvCFBP7112P_RS17030 (XcvCFBP7112P_17060) - 3854967..3855617 (+) 651 WP_022558570.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37634.27 Da        Isoelectric Point: 4.3924

>NTDB_id=237758 XcvCFBP7112P_RS17020 WP_089142081.1 3850969..3852027(-) (comM) [Xanthomonas citri pv. vignicola strain CFBP7112]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFVLVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=237758 XcvCFBP7112P_RS17020 WP_089142081.1 3850969..3852027(-) (comM) [Xanthomonas citri pv. vignicola strain CFBP7112]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCGACTGCCGTGAAGCTCTTGCAGCTATC
GCGCAGCGGGAACCGTTTCCGCGTGGAACATTACGCGGTAGAACCATTGCCGCCGAATGCGGTCGTGGAAAAGAACATCG
TCGAAGTGGAAGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCAGCTGCT
GTGGCAGGGTCGGCGGTGATCACTAAGTTGATCCCGATGCCGGCCGATCTGGACGATAGCGACCTGGAGGCCCAGGTCGA
ACTGGAAGCCACCAATTACATTCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTGGGCCCGATGCCCAATA
GCCCGGACATGGTGCAGGTGCTGCTGGCCGCCTCGCGTTCGGAGAATGTGGAACTGCGCCAGTCGGCGCTGGAACTCGGC
GGCCTGACCGCCAAGGTAATGGACGTGGAGGCCTTTGCGGTCGAAAACGCCTTCGTCCTGGTTGCCAGCGAATTGCCGGT
GGCCGCCGATGCGGTGGTGGCGCTGGTGGATATCGGCGCGACCATGACCACGCTGAGCGTGCTGCGCTCCGGTCGCAGTC
TGTATAGCCGCGAGCAGGTGTTCGGCGGCAAGCAGCTCACTGACGAAGTGATGCGCCGTTATGGACTGACCTACGAAGAG
GCTGGCCTTGCCAAGCGCCAGGGCGGCCTGCCGGAAAGCTACGAGGTCGAAGTGCTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGTCTGCTGCAGTTCTTCTATGCGGGCAGTGAGTTCAACCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGGCGCGCCTGCCGGAGATGGTGGAAGAGCAGCTCGGTGTGACCACGGTCGTTGCAAATCCGCTTGCC
CAGATGACGCTTGGCCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCACTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

51.282

99.716

0.511
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  pilM Acinetobacter baumannii D1279779

50.852

100

0.509
  pilM Legionella pneumophila strain ERS1305867

47.293

99.716

0.472

Multiple sequence alignment