Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   XcvCFBP7112P_RS16490 Genome accession   NZ_CP022267
Coordinates   3719696..3721432 (-) Length   578 a.a.
NCBI ID   WP_089142726.1    Uniprot ID   -
Organism   Xanthomonas citri pv. vignicola strain CFBP7112     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3714696..3726432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XcvCFBP7112P_RS16475 (XcvCFBP7112P_16505) - 3715910..3717523 (+) 1614 WP_089142029.1 ATP-binding protein -
  XcvCFBP7112P_RS16480 (XcvCFBP7112P_16510) pilR 3717793..3719247 (+) 1455 WP_170922314.1 sigma-54 dependent transcriptional regulator Regulator
  XcvCFBP7112P_RS16490 (XcvCFBP7112P_16520) pilB 3719696..3721432 (-) 1737 WP_089142726.1 type IV-A pilus assembly ATPase PilB Machinery gene
  XcvCFBP7112P_RS16495 (XcvCFBP7112P_16525) - 3721497..3721952 (-) 456 WP_089095832.1 pilin -
  XcvCFBP7112P_RS16500 (XcvCFBP7112P_16530) - 3722062..3722502 (-) 441 WP_015471735.1 pilin -
  XcvCFBP7112P_RS16505 (XcvCFBP7112P_16535) pilC 3722855..3724111 (+) 1257 WP_040107659.1 type II secretion system F family protein Machinery gene
  XcvCFBP7112P_RS16510 (XcvCFBP7112P_16540) - 3724118..3724981 (+) 864 WP_089095833.1 A24 family peptidase -
  XcvCFBP7112P_RS16515 (XcvCFBP7112P_16545) coaE 3724995..3725600 (+) 606 WP_089142030.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 62542.69 Da        Isoelectric Point: 5.6024

>NTDB_id=237756 XcvCFBP7112P_RS16490 WP_089142726.1 3719696..3721432(-) (pilB) [Xanthomonas citri pv. vignicola strain CFBP7112]
MNSVVTANLVGITGIARRLVQEGAVEEAVARSAMDQASAAKIPLPQWFAEKKLVTASQLAAANAVEFGMPLLDVSAFDAS
QNAVKLVSEELLQKHQVLPLFKRGNRLFVGVSNPTQTRALDDIKFHTNLVVEPILVDEDQIRRTLEQWQASNAALGSALG
DDEEGMGDLDVSAGDEDMGAGGDSGVDAKGDDTPVVKFVNKVLVDAIRRGASDIHFEPYEDDYRVRLRIDGLLKNVAKAP
VKLNQRIAARLKVMSQLDIAEKRVPQDGRIKLNLSKTKQIDFRVSTLPTLFGEKVVLRILDGSAAKLGIDKLGYEADQQK
LFLEAIHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNNKRGMTFAAALRSFLRQDP
DIIMVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCNNCKRKSTLP
DNALLAEGFTPAQLAAGIELYEAVGCDECTEGYKGRTGIYQVMPMTDEIGAIVLEGGNAMQIAEAAQAIGIRDLRQSALM
KAAHGVTSLAEINRVTKD

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=237756 XcvCFBP7112P_RS16490 WP_089142726.1 3719696..3721432(-) (pilB) [Xanthomonas citri pv. vignicola strain CFBP7112]
ATGAATAGCGTCGTGACCGCAAACTTGGTTGGAATAACGGGCATCGCGCGTCGTCTGGTGCAAGAAGGTGCGGTCGAAGA
AGCAGTTGCGCGATCTGCGATGGATCAGGCATCTGCGGCAAAGATTCCTCTACCGCAATGGTTTGCTGAGAAGAAGTTGG
TCACTGCTTCCCAGCTCGCCGCTGCTAATGCGGTCGAGTTCGGCATGCCACTGCTGGATGTGTCGGCGTTCGACGCCAGC
CAAAACGCGGTCAAGCTGGTAAGTGAGGAACTACTTCAGAAGCACCAAGTGCTACCGCTGTTCAAGCGCGGCAACCGGCT
GTTCGTGGGGGTGAGCAATCCGACCCAGACCCGGGCGCTGGATGACATCAAGTTTCACACGAACTTGGTGGTCGAGCCCA
TCCTTGTGGATGAAGATCAGATCCGTCGCACCCTGGAGCAATGGCAGGCCAGCAATGCTGCGCTGGGCTCCGCACTCGGT
GACGACGAGGAGGGCATGGGGGATCTGGACGTTTCGGCTGGCGACGAGGACATGGGCGCCGGCGGGGATTCCGGGGTCGA
TGCCAAGGGCGACGACACGCCGGTGGTGAAGTTCGTCAACAAGGTGCTGGTGGATGCGATCCGGCGGGGAGCGTCGGACA
TCCATTTCGAGCCGTATGAAGACGACTACCGGGTACGCTTGCGCATCGATGGCCTGTTGAAGAACGTGGCCAAGGCGCCG
GTGAAGCTGAACCAGCGCATCGCGGCGCGCTTGAAGGTGATGTCGCAGCTGGATATCGCCGAGAAGCGGGTGCCGCAGGA
CGGGCGCATCAAGCTCAACCTGTCCAAGACCAAGCAGATCGACTTCCGTGTCAGCACCTTGCCGACCCTGTTCGGTGAAA
AAGTGGTGCTGCGTATCCTGGACGGCAGCGCGGCCAAGCTGGGCATCGACAAGCTGGGCTATGAGGCGGACCAGCAGAAG
TTGTTCCTGGAGGCGATCCACAAGCCCTATGGCATGGTGCTGGTGACCGGGCCGACCGGCTCGGGCAAGACGGTGTCGTT
GTATACGGCGCTGGGAATTCTCAACGACGAGACGCGCAATATCTCCACCGCGGAGGACCCGGTCGAAATCCGCTTGCCTG
GCGTCAATCAGGTACAGCAGAACAACAAGCGTGGCATGACCTTCGCGGCAGCCTTGCGCTCGTTCCTGCGACAGGACCCG
GACATCATCATGGTCGGCGAAATCCGTGACCTGGAGACGGCCGAGATTGCGATCAAGGCGGCGCAGACGGGTCACATGGT
GCTGTCGACGTTGCACACCAACGATGCGCCGCAGACCATCGCCCGTTTGATGAACATGGGCATTGCGCCCTACAACATCA
CCTCGTCAGTGACGCTGGTGATTGCGCAGCGTCTGGCGCGGCGGTTGTGCAACAACTGCAAGCGCAAGTCGACGCTGCCT
GACAACGCATTGCTGGCCGAAGGGTTCACGCCTGCACAGCTTGCCGCCGGGATCGAGCTGTATGAGGCGGTCGGTTGCGA
CGAGTGCACCGAAGGCTACAAGGGGCGTACCGGTATCTACCAGGTGATGCCGATGACCGACGAAATCGGCGCGATCGTGC
TGGAGGGCGGCAACGCGATGCAGATCGCCGAGGCCGCGCAGGCGATCGGTATCCGCGATTTGCGGCAGTCGGCGTTGATG
AAGGCTGCGCACGGGGTGACCAGCCTGGCGGAGATCAATCGAGTGACGAAGGACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(49-153)

Type II/IV secretion system protein (T2SSE)

(201-468)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baumannii D1279779

56.69

98.27

0.557
  pilB Acinetobacter baylyi ADP1

55.81

98.27

0.548
  pilB Legionella pneumophila strain ERS1305867

52.197

98.443

0.514
  pilB Vibrio cholerae strain A1552

49.22

99.827

0.491
  pilF Neisseria gonorrhoeae MS11

48.944

98.27

0.481
  pilB Vibrio parahaemolyticus RIMD 2210633

47.143

96.886

0.457
  pilB Vibrio campbellii strain DS40M4

45.694

98.443

0.45

Multiple sequence alignment