Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CEW87_RS02880 | Genome accession | NZ_CP022188 |
| Coordinates | 623619..624101 (-) | Length | 160 a.a. |
| NCBI ID | WP_108971384.1 | Uniprot ID | A0A2U8GXE2 |
| Organism | Parazoarcus communis strain TSNA42 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 618619..629101
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CEW87_RS02865 (CEW87_02865) | - | 619912..620355 (-) | 444 | WP_108971381.1 | response regulator | - |
| CEW87_RS02870 (CEW87_02870) | - | 620352..622586 (-) | 2235 | WP_108971382.1 | sensor histidine kinase | - |
| CEW87_RS02875 (CEW87_02875) | - | 622588..623550 (-) | 963 | WP_159098066.1 | ABC transporter substrate-binding protein | - |
| CEW87_RS02880 (CEW87_02880) | ssb | 623619..624101 (-) | 483 | WP_108971384.1 | single-stranded DNA-binding protein | Machinery gene |
| CEW87_RS02885 (CEW87_02885) | - | 624125..625333 (-) | 1209 | WP_234421647.1 | MFS transporter | - |
| CEW87_RS02890 (CEW87_02890) | uvrA | 625426..628248 (+) | 2823 | WP_108971386.1 | excinuclease ABC subunit UvrA | - |
| CEW87_RS02895 (CEW87_02895) | - | 628351..628650 (+) | 300 | WP_108971387.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 160 a.a. Molecular weight: 17443.43 Da Isoelectric Point: 7.0212
>NTDB_id=237483 CEW87_RS02880 WP_108971384.1 623619..624101(-) (ssb) [Parazoarcus communis strain TSNA42]
MASLNKVILIGNLGKDPETRYAPSGDAITNLTVATTETWKDKASGERREATEWHRVVFFGRVAEVAAQYLRKGSQIYVEG
RLQTRKWQDKEGQDRYTTEIRGDEMKMLGRREGAGEAPVRGGDSGGYDAPAAAPSRQPAPAPAAKPAKGGFGDFDDDIPF
MASLNKVILIGNLGKDPETRYAPSGDAITNLTVATTETWKDKASGERREATEWHRVVFFGRVAEVAAQYLRKGSQIYVEG
RLQTRKWQDKEGQDRYTTEIRGDEMKMLGRREGAGEAPVRGGDSGGYDAPAAAPSRQPAPAPAAKPAKGGFGDFDDDIPF
Nucleotide
Download Length: 483 bp
>NTDB_id=237483 CEW87_RS02880 WP_108971384.1 623619..624101(-) (ssb) [Parazoarcus communis strain TSNA42]
ATGGCATCCCTGAATAAAGTCATTCTGATCGGAAACCTGGGCAAGGACCCGGAGACCCGTTATGCACCCAGCGGCGACGC
GATCACCAACCTGACCGTGGCGACCACCGAGACCTGGAAGGACAAGGCGTCGGGTGAGCGTCGTGAAGCCACCGAGTGGC
ATCGCGTCGTGTTCTTTGGGCGCGTGGCCGAAGTGGCTGCGCAGTACCTGCGCAAGGGCAGTCAGATCTATGTGGAAGGT
CGGCTGCAGACGCGCAAGTGGCAGGACAAGGAAGGTCAGGATCGTTACACCACCGAAATCCGTGGTGACGAGATGAAGAT
GCTCGGTCGCCGTGAAGGCGCTGGCGAGGCGCCGGTGCGTGGCGGCGACAGCGGCGGATACGATGCGCCTGCAGCCGCAC
CCAGCCGTCAGCCCGCACCGGCACCCGCTGCCAAGCCGGCAAAAGGCGGGTTCGGGGACTTTGACGACGACATTCCCTTC
TGA
ATGGCATCCCTGAATAAAGTCATTCTGATCGGAAACCTGGGCAAGGACCCGGAGACCCGTTATGCACCCAGCGGCGACGC
GATCACCAACCTGACCGTGGCGACCACCGAGACCTGGAAGGACAAGGCGTCGGGTGAGCGTCGTGAAGCCACCGAGTGGC
ATCGCGTCGTGTTCTTTGGGCGCGTGGCCGAAGTGGCTGCGCAGTACCTGCGCAAGGGCAGTCAGATCTATGTGGAAGGT
CGGCTGCAGACGCGCAAGTGGCAGGACAAGGAAGGTCAGGATCGTTACACCACCGAAATCCGTGGTGACGAGATGAAGAT
GCTCGGTCGCCGTGAAGGCGCTGGCGAGGCGCCGGTGCGTGGCGGCGACAGCGGCGGATACGATGCGCCTGCAGCCGCAC
CCAGCCGTCAGCCCGCACCGGCACCCGCTGCCAAGCCGGCAAAAGGCGGGTTCGGGGACTTTGACGACGACATTCCCTTC
TGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
53.039 |
100 |
0.6 |
| ssb | Vibrio cholerae strain A1552 |
53.672 |
100 |
0.594 |
| ssb | Neisseria gonorrhoeae MS11 |
50.286 |
100 |
0.55 |
| ssb | Neisseria meningitidis MC58 |
49.714 |
100 |
0.544 |