Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CEW83_RS11735 Genome accession   NZ_CP022187
Coordinates   2571983..2572465 (-) Length   160 a.a.
NCBI ID   WP_108949506.1    Uniprot ID   A0A2U8GQH1
Organism   Parazoarcus communis strain TSPY31     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2566983..2577465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEW83_RS11720 (CEW83_11710) - 2568276..2568719 (-) 444 WP_108949503.1 response regulator -
  CEW83_RS11725 (CEW83_11715) - 2568716..2570950 (-) 2235 WP_108949504.1 sensor histidine kinase -
  CEW83_RS11730 (CEW83_11720) - 2570952..2571914 (-) 963 WP_159099450.1 ABC transporter substrate-binding protein -
  CEW83_RS11735 (CEW83_11725) ssb 2571983..2572465 (-) 483 WP_108949506.1 single-stranded DNA-binding protein Machinery gene
  CEW83_RS11740 (CEW83_11730) - 2572489..2573697 (-) 1209 WP_234418788.1 MFS transporter -
  CEW83_RS11745 (CEW83_11735) uvrA 2573790..2576612 (+) 2823 WP_108949508.1 excinuclease ABC subunit UvrA -
  CEW83_RS11750 (CEW83_11740) - 2576716..2577015 (+) 300 WP_108949509.1 hypothetical protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17429.40 Da        Isoelectric Point: 7.0212

>NTDB_id=237467 CEW83_RS11735 WP_108949506.1 2571983..2572465(-) (ssb) [Parazoarcus communis strain TSPY31]
MASLNKVILIGNLGKDPETRYAPSGDAITNLTVATTETWKDKASGERREATEWHRVVFFGRVAEVAAQYLRKGSQIYVEG
RLQTRKWQDKEGQDRYTTEIRGDEMKMLGRREGGGEAPVRGGDSGGYDAPAAAPSRQPAPAPAAKPAKGGFGDFDDDIPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=237467 CEW83_RS11735 WP_108949506.1 2571983..2572465(-) (ssb) [Parazoarcus communis strain TSPY31]
ATGGCATCCCTGAATAAAGTCATTCTGATCGGAAACCTGGGCAAGGACCCGGAGACCCGTTATGCACCCAGCGGCGACGC
GATCACCAACCTGACCGTGGCGACCACCGAGACCTGGAAGGACAAGGCGTCGGGTGAGCGTCGTGAAGCCACCGAGTGGC
ATCGCGTCGTGTTCTTTGGGCGCGTGGCCGAAGTGGCTGCGCAGTACCTGCGCAAGGGCAGTCAGATCTATGTGGAAGGT
CGGCTGCAGACGCGCAAGTGGCAGGACAAGGAAGGTCAGGATCGTTACACCACCGAAATCCGTGGTGACGAGATGAAGAT
GCTCGGTCGCCGTGAAGGCGGTGGCGAGGCGCCGGTGCGTGGCGGCGACAGCGGCGGATACGATGCGCCTGCAGCCGCAC
CCAGCCGTCAGCCCGCACCGGCACCCGCTGCCAAGCCGGCAAAAGGCGGGTTCGGGGACTTTGACGACGACATTCCCTTC
TGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U8GQH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53.591

100

0.606
  ssb Vibrio cholerae strain A1552

54.237

100

0.6
  ssb Neisseria gonorrhoeae MS11

50.286

100

0.55
  ssb Neisseria meningitidis MC58

49.714

100

0.544

Multiple sequence alignment