Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   C7K40_RS06690 Genome accession   NZ_CP027771
Coordinates   1325736..1326401 (-) Length   221 a.a.
NCBI ID   WP_002983685.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain DMG1800716     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1320736..1331401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7K40_RS06685 (C7K40_06680) raiA 1325108..1325656 (-) 549 WP_002988974.1 ribosome-associated translation inhibitor RaiA -
  C7K40_RS06690 (C7K40_06685) comFC/cflB 1325736..1326401 (-) 666 WP_002983685.1 ComF family protein Machinery gene
  C7K40_RS06695 (C7K40_06690) comFA/cflA 1326373..1327698 (-) 1326 WP_063629559.1 DEAD/DEAH box helicase Machinery gene
  C7K40_RS06700 (C7K40_06695) - 1327754..1328386 (+) 633 WP_009880468.1 YigZ family protein -
  C7K40_RS06705 (C7K40_06700) cysK 1328514..1329455 (+) 942 WP_011888673.1 cysteine synthase A -
  C7K40_RS06710 (C7K40_06705) - 1329474..1329851 (-) 378 WP_002983674.1 S1 RNA-binding domain-containing protein -
  C7K40_RS06715 (C7K40_06710) - 1329851..1331251 (-) 1401 WP_023612963.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25163.41 Da        Isoelectric Point: 9.4626

>NTDB_id=237204 C7K40_RS06690 WP_002983685.1 1325736..1326401(-) (comFC/cflB) [Streptococcus pyogenes strain DMG1800716]
MICLLCQQISQTPISITEIIFLRRISSPICQQCQKSFQKIGKSVCATCCANSDIIACRDCLKWENKGYNVNHRSLYCYNA
AMKAYFSQYKFQGDYLLRKVFAVELADVITKYYKGYIPVPVPVSPGCFRERQFNQVSAILEAANVSYLSLFEKLDNTHQS
SRTKKERLLVEKSYRLLKVSNIPDKILIVDDIYTTGSTIIALRKQLAKVANSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=237204 C7K40_RS06690 WP_002983685.1 1325736..1326401(-) (comFC/cflB) [Streptococcus pyogenes strain DMG1800716]
ATGATCTGTCTACTATGTCAACAAATTAGTCAAACACCAATAAGTATTACAGAAATCATCTTTTTAAGGCGTATCTCTTC
ACCGATTTGTCAACAATGTCAAAAAAGCTTTCAAAAGATAGGAAAAAGTGTTTGTGCGACATGTTGTGCAAACTCAGATA
TAATAGCTTGTCGAGATTGTCTAAAATGGGAAAACAAAGGATACAATGTAAATCATAGAAGCTTATATTGTTATAATGCT
GCTATGAAAGCATACTTCAGTCAATATAAGTTTCAAGGAGACTATTTATTAAGAAAAGTTTTTGCAGTAGAACTTGCCGA
TGTTATTACCAAGTACTATAAAGGCTATATCCCAGTCCCGGTTCCTGTAAGTCCCGGTTGTTTTCGAGAAAGACAATTTA
ATCAAGTGAGCGCTATTCTTGAGGCAGCTAATGTTAGCTACCTTTCTCTTTTTGAAAAGCTAGATAATACTCACCAATCT
TCCAGAACAAAAAAAGAGAGATTATTAGTAGAAAAATCTTATCGACTACTAAAAGTATCAAACATTCCTGATAAAATCCT
TATAGTAGATGATATTTATACTACTGGTAGTACAATTATCGCTCTTAGAAAACAATTGGCTAAAGTAGCAAATAGTGACA
TTAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae D39

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae R6

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae TIGR4

41.629

100

0.416
  comFC/cflB Streptococcus mitis SK321

41.629

100

0.416
  comFC/cflB Streptococcus mitis NCTC 12261

41.176

100

0.412