Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   C7A17_RS25895 Genome accession   NZ_CP027657
Coordinates   5579767..5580435 (-) Length   222 a.a.
NCBI ID   WP_106742298.1    Uniprot ID   -
Organism   Ectopseudomonas mendocina strain NEB698     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 5574767..5585435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7A17_RS25880 (C7A17_25880) - 5575442..5577586 (+) 2145 WP_106742289.1 methyl-accepting chemotaxis protein -
  C7A17_RS25885 (C7A17_25885) - 5577749..5578345 (+) 597 WP_106742292.1 NADPH-dependent FMN reductase -
  C7A17_RS25890 (C7A17_25890) - 5578457..5579770 (-) 1314 WP_106742295.1 ATP-binding protein -
  C7A17_RS25895 (C7A17_25895) ciaR 5579767..5580435 (-) 669 WP_106742298.1 response regulator transcription factor Regulator
  C7A17_RS25900 (C7A17_25900) - 5580435..5580749 (-) 315 WP_106742300.1 PepSY domain-containing protein -
  C7A17_RS25905 (C7A17_25905) - 5580749..5581057 (-) 309 WP_106742303.1 PepSY domain-containing protein -
  C7A17_RS25910 (C7A17_25910) - 5581206..5582285 (+) 1080 WP_106742306.1 patatin-like phospholipase family protein -
  C7A17_RS25915 (C7A17_25915) - 5582335..5583171 (+) 837 WP_106742309.1 hypothetical protein -
  C7A17_RS25920 (C7A17_25920) queD 5583226..5583582 (+) 357 WP_003461315.1 6-carboxytetrahydropterin synthase QueD -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24497.73 Da        Isoelectric Point: 5.3464

>NTDB_id=236974 C7A17_RS25895 WP_106742298.1 5579767..5580435(-) (ciaR) [Ectopseudomonas mendocina strain NEB698]
MRLLLVEDHVPLADELTASLSRQGYAVDWLADGRDAAYQGASEPYDLIILDLGLPGKPGLEVLQEWRAGGLATPVLVLTA
RGSWAERIEGLKAGADDYLTKPFHPEELALRIQALLRRAHGLANQPQLEAAGLQLDESRQCVTAGGEAIDLTAAEFRLLR
YFMLHPGQILSKSHLADHLYDGETERDSNVIEVHVNRLRGKLGRNVIETRRGQGYRFTGEQG

Nucleotide


Download         Length: 669 bp        

>NTDB_id=236974 C7A17_RS25895 WP_106742298.1 5579767..5580435(-) (ciaR) [Ectopseudomonas mendocina strain NEB698]
ATGCGCCTGTTGCTGGTGGAAGATCATGTACCCCTGGCCGATGAGCTGACGGCCAGTCTGAGTCGCCAAGGTTATGCCGT
GGACTGGCTGGCAGATGGCCGTGACGCTGCCTATCAGGGGGCCAGCGAGCCTTATGACCTGATCATTCTCGACCTCGGCC
TGCCGGGCAAACCAGGCCTGGAGGTGTTGCAGGAATGGCGCGCTGGTGGCCTGGCTACCCCGGTTCTGGTGCTGACCGCG
CGTGGCTCCTGGGCCGAACGCATCGAAGGGCTCAAGGCCGGCGCTGATGATTACCTGACCAAACCCTTCCACCCGGAGGA
GTTGGCTTTACGCATTCAGGCGCTGCTGCGCCGTGCGCATGGCTTGGCCAATCAGCCACAACTGGAAGCCGCTGGCCTGC
AGCTGGATGAGAGCCGCCAATGCGTAACGGCGGGCGGCGAGGCCATCGACCTGACCGCCGCCGAATTTCGCTTGCTGCGT
TATTTCATGCTGCACCCGGGGCAGATCCTGTCCAAGAGCCACCTGGCCGATCACCTCTACGACGGTGAGACCGAGCGTGA
TTCCAACGTCATCGAAGTGCACGTCAATCGCCTGCGTGGCAAGCTCGGGCGCAATGTGATCGAGACCCGCCGTGGGCAGG
GCTACCGCTTTACCGGAGAGCAGGGTTGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(146-217)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus mutans UA159

39.545

99.099

0.392
  ciaR Streptococcus pneumoniae Rx1

38.356

98.649

0.378
  ciaR Streptococcus pneumoniae D39

38.356

98.649

0.378
  ciaR Streptococcus pneumoniae R6

38.356

98.649

0.378
  ciaR Streptococcus pneumoniae TIGR4

38.356

98.649

0.378
  micA Streptococcus pneumoniae Cp1015

35.683

100

0.365