Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   C7A17_RS07380 Genome accession   NZ_CP027657
Coordinates   1598816..1599436 (-) Length   206 a.a.
NCBI ID   WP_106737413.1    Uniprot ID   -
Organism   Ectopseudomonas mendocina strain NEB698     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1593816..1604436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7A17_RS07360 (C7A17_07360) aroB 1594474..1595577 (-) 1104 WP_106737410.1 3-dehydroquinate synthase -
  C7A17_RS07365 (C7A17_07365) aroK 1595629..1596147 (-) 519 WP_106737411.1 shikimate kinase AroK -
  C7A17_RS07370 (C7A17_07370) pilQ 1596153..1598234 (-) 2082 WP_106742795.1 type IV pilus secretin PilQ family protein Machinery gene
  C7A17_RS07375 (C7A17_07375) pilP 1598292..1598816 (-) 525 WP_106737412.1 type 4a pilus biogenesis lipoprotein PilP -
  C7A17_RS07380 (C7A17_07380) pilO 1598816..1599436 (-) 621 WP_106737413.1 type 4a pilus biogenesis protein PilO Machinery gene
  C7A17_RS07385 (C7A17_07385) pilN 1599433..1600005 (-) 573 WP_106737414.1 type 4a pilus biogenesis protein PilN Machinery gene
  C7A17_RS07390 (C7A17_07390) pilM 1600005..1601069 (-) 1065 WP_106737415.1 pilus assembly protein PilM Machinery gene
  C7A17_RS07395 (C7A17_07395) - 1601251..1603662 (+) 2412 WP_106737416.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 22986.32 Da        Isoelectric Point: 4.5451

>NTDB_id=236909 C7A17_RS07380 WP_106737413.1 1598816..1599436(-) (pilO) [Ectopseudomonas mendocina strain NEB698]
MSIRDSLESLRSVDLNELDLNNVGSWPGSVKFIAGLLLLIVVLGLGYNFHLKDMQSILEQRQQEEQNLKEQFSSKAFQAA
NLEAYKEQMKEMEVSFGALLRQLPSDTEVPGLLEDITRTGLGSGLEFEEIKLLPEVVQQFYIELPIEIKVTGAYHDLATF
VSGVASLPRIVTLHDFELAPVKSEGGSALSMHILAKTYRYNDKGVQ

Nucleotide


Download         Length: 621 bp        

>NTDB_id=236909 C7A17_RS07380 WP_106737413.1 1598816..1599436(-) (pilO) [Ectopseudomonas mendocina strain NEB698]
ATGAGCATTCGAGACTCTCTGGAAAGCTTGCGTAGTGTCGATCTGAATGAGTTGGATCTTAATAATGTGGGGTCGTGGCC
AGGCTCGGTCAAGTTCATTGCAGGGCTATTGTTGCTGATAGTTGTTTTAGGGCTTGGCTACAATTTTCACCTGAAAGATA
TGCAAAGTATTTTGGAGCAACGCCAGCAGGAAGAGCAGAATCTTAAGGAGCAGTTTTCTAGTAAAGCTTTTCAAGCCGCG
AACCTGGAAGCCTACAAAGAGCAGATGAAGGAAATGGAGGTTTCCTTTGGTGCTCTTCTTCGTCAGTTGCCAAGTGATAC
GGAAGTTCCAGGACTGCTGGAAGATATTACCCGCACTGGTTTGGGTAGTGGTTTGGAATTTGAGGAAATTAAACTTCTTC
CTGAGGTCGTGCAGCAATTTTATATAGAGTTGCCAATTGAGATAAAGGTTACTGGTGCATACCATGATCTAGCGACTTTT
GTGAGTGGGGTCGCCAGTTTGCCTCGAATTGTGACTTTGCATGACTTTGAGTTGGCTCCTGTCAAATCTGAGGGTGGGAG
TGCTCTCAGCATGCATATTTTGGCCAAAACTTATAGATATAATGACAAGGGTGTTCAGTAA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilO (PilO)

(58-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Legionella pneumophila strain ERS1305867

47.449

95.146

0.451
  pilO Acinetobacter baumannii D1279779

44.211

92.233

0.408
  comO/pilO Acinetobacter baylyi ADP1

43.915

91.748

0.403