Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   C7A17_RS07385 Genome accession   NZ_CP027657
Coordinates   1599433..1600005 (-) Length   190 a.a.
NCBI ID   WP_106737414.1    Uniprot ID   -
Organism   Ectopseudomonas mendocina strain NEB698     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1594433..1605005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7A17_RS07360 (C7A17_07360) aroB 1594474..1595577 (-) 1104 WP_106737410.1 3-dehydroquinate synthase -
  C7A17_RS07365 (C7A17_07365) aroK 1595629..1596147 (-) 519 WP_106737411.1 shikimate kinase AroK -
  C7A17_RS07370 (C7A17_07370) pilQ 1596153..1598234 (-) 2082 WP_106742795.1 type IV pilus secretin PilQ family protein Machinery gene
  C7A17_RS07375 (C7A17_07375) pilP 1598292..1598816 (-) 525 WP_106737412.1 type 4a pilus biogenesis lipoprotein PilP -
  C7A17_RS07380 (C7A17_07380) pilO 1598816..1599436 (-) 621 WP_106737413.1 type 4a pilus biogenesis protein PilO Machinery gene
  C7A17_RS07385 (C7A17_07385) pilN 1599433..1600005 (-) 573 WP_106737414.1 type 4a pilus biogenesis protein PilN Machinery gene
  C7A17_RS07390 (C7A17_07390) pilM 1600005..1601069 (-) 1065 WP_106737415.1 pilus assembly protein PilM Machinery gene
  C7A17_RS07395 (C7A17_07395) - 1601251..1603662 (+) 2412 WP_106737416.1 penicillin-binding protein 1A -
  C7A17_RS07400 (C7A17_07400) - 1603719..1604987 (-) 1269 WP_106737417.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 21365.53 Da        Isoelectric Point: 8.5978

>NTDB_id=236910 C7A17_RS07385 WP_106737414.1 1599433..1600005(-) (pilN) [Ectopseudomonas mendocina strain NEB698]
MARINLLPWREQLREERKQRFLVSLVGVLVVAAGLVFLGDQMLSAAIDNQTARNDFVKKEIAVLDARIQEISELRTRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTSVKMTDKNIAIVGAAESNNRVSNLMRNLDSSEWLTAPNLTEVKA
VTAGALDQANVFQLSVQQTQPDHEQAEAGK

Nucleotide


Download         Length: 573 bp        

>NTDB_id=236910 C7A17_RS07385 WP_106737414.1 1599433..1600005(-) (pilN) [Ectopseudomonas mendocina strain NEB698]
ATGGCGCGGATCAATCTACTTCCTTGGCGCGAACAGCTGCGCGAAGAGCGTAAACAGCGTTTTCTGGTCAGTCTCGTCGG
TGTTCTCGTTGTTGCCGCAGGCCTCGTATTTCTCGGCGATCAGATGCTTAGCGCGGCGATTGATAATCAAACTGCACGCA
ATGACTTCGTTAAGAAGGAGATTGCTGTTCTTGATGCTCGAATTCAGGAGATTAGCGAGCTGCGCACGCGTAGGCAGCAA
TTGCTAGAGCGTATGAAAATCATCCAGGACTTGCAGGGTAACCGGCCAATCATCGGTCGGGTATTTGATCAGTTAGTGAG
AACGCTGCCGGATGGTGTGTATTTCACCAGCGTCAAAATGACTGATAAAAATATCGCTATTGTTGGCGCTGCAGAGTCGA
ATAATCGCGTTTCGAACCTTATGCGTAACTTGGATAGTTCGGAGTGGTTAACCGCTCCTAATTTGACTGAAGTGAAGGCT
GTCACGGCAGGCGCCTTGGATCAGGCAAACGTGTTTCAGCTGAGCGTTCAGCAGACTCAGCCTGATCACGAGCAAGCGGA
GGCCGGGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.143

92.105

0.379

Multiple sequence alignment