Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   DSM104627_RS01555 Genome accession   NZ_CP027638
Coordinates   312025..313200 (+) Length   391 a.a.
NCBI ID   WP_002781160.1    Uniprot ID   A0ABP2NQD9
Organism   Campylobacter coli strain meC0467     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 307025..318200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSM104627_RS01530 (DSM104627_00308) ctsR 307594..307905 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  DSM104627_RS01535 (DSM104627_00309) ctsD 307883..309301 (+) 1419 WP_002833219.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  DSM104627_RS01540 (DSM104627_00310) ctsP 309294..309890 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  DSM104627_RS01545 (DSM104627_00311) ctsX 309887..310483 (+) 597 WP_002779313.1 CDC27 family protein Machinery gene
  DSM104627_RS01550 (DSM104627_00312) ctsE 310476..312038 (+) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  DSM104627_RS01555 (DSM104627_00313) ctsF 312025..313200 (+) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  DSM104627_RS01560 (DSM104627_00314) - 313197..313961 (-) 765 WP_002781157.1 TSUP family transporter -
  DSM104627_RS01565 (DSM104627_00315) - 313964..314728 (-) 765 WP_002781156.1 TIGR02757 family protein -
  DSM104627_RS01570 (DSM104627_00316) flgK 314745..316571 (-) 1827 WP_045243706.1 flagellar hook-associated protein FlgK -
  DSM104627_RS01575 (DSM104627_00317) - 316581..317015 (-) 435 WP_002779263.1 flagellar protein FlgN -
  DSM104627_RS01580 (DSM104627_00318) flgM 317057..317254 (-) 198 WP_002779262.1 flagellar biosynthesis anti-sigma factor FlgM -
  DSM104627_RS01585 (DSM104627_00319) - 317317..317658 (-) 342 WP_002784057.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 45518.35 Da        Isoelectric Point: 9.4461

>NTDB_id=236804 DSM104627_RS01555 WP_002781160.1 312025..313200(+) (ctsF) [Campylobacter coli strain meC0467]
MKLYELEIKGKTKQTKHLRAKNLNEAQAKAIAKKWEILNIKEIQKASFKRLDDARFILFFQELSLLCEVGISIKDALKEL
DKIYSHKMIAKLCDNLNLGQNLSLAFENANFGLTHAELALIKTSQNTGKLSEIFMQISRLRQNNVENEQRVKKALRYPLI
VFLSVCAAFVLLMLFVVPNFKDLFEDLNLALPFITELIIYIYNFLDKYILLVFCLIALILFLTLFLYRKYYFFSYFCDSL
LLKLPLLSKFIIYQQNYSFFMIFSLLLKSGISLLEAFKLATLALNNKKVLLYYQEIRTFMDSGLEISHAFKKVDLFDPLV
FSMLSIAMKSSKLEFLSEEIAKYYKNKSENLMDKFLSFLEPIMTLWVAILVLFLALGIFLPIWELSSGVNF

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=236804 DSM104627_RS01555 WP_002781160.1 312025..313200(+) (ctsF) [Campylobacter coli strain meC0467]
ATGAAGCTTTATGAGCTCGAGATTAAAGGCAAAACAAAACAGACAAAGCATTTAAGGGCTAAAAATTTAAACGAAGCTCA
AGCAAAAGCTATCGCTAAAAAATGGGAAATTTTAAATATCAAAGAGATACAAAAAGCAAGTTTTAAAAGATTAGATGATG
CAAGATTTATCCTTTTCTTTCAAGAATTATCTTTGCTTTGCGAAGTAGGAATCAGCATAAAAGATGCTTTAAAGGAGCTT
GATAAAATATATTCTCACAAGATGATTGCCAAGCTTTGCGATAATTTAAATTTAGGACAAAATTTAAGCCTTGCTTTTGA
AAATGCAAATTTTGGACTTACTCATGCGGAATTAGCCCTTATTAAAACTTCCCAAAACACAGGAAAATTAAGTGAAATTT
TCATGCAAATTTCAAGATTAAGACAAAATAATGTAGAAAATGAACAAAGAGTCAAAAAAGCTTTAAGATATCCTTTGATT
GTTTTTTTAAGTGTGTGCGCGGCTTTTGTTTTACTCATGCTTTTTGTTGTGCCTAATTTTAAAGATTTATTTGAGGATTT
AAATTTAGCCTTACCCTTTATAACCGAGCTTATAATTTATATTTATAATTTTTTGGATAAGTATATTTTGCTTGTGTTTT
GTTTGATCGCACTTATTTTATTTCTTACTTTATTTTTGTATAGAAAATATTATTTCTTTTCATATTTTTGTGATAGCTTG
CTTTTAAAACTTCCTTTGTTGTCTAAATTTATTATTTATCAGCAAAATTATTCTTTTTTTATGATTTTCTCTTTACTTTT
AAAAAGCGGCATTTCTCTTTTGGAAGCTTTTAAATTAGCCACTTTGGCCTTAAATAATAAAAAGGTATTATTGTATTATC
AAGAAATTAGAACATTTATGGATTCTGGCCTTGAAATAAGTCACGCCTTTAAAAAAGTAGATCTTTTTGATCCTTTGGTT
TTTTCTATGTTGAGTATAGCTATGAAAAGTTCTAAGCTTGAGTTTTTGAGCGAGGAGATTGCGAAATATTATAAAAACAA
AAGTGAAAATTTAATGGACAAGTTTTTAAGCTTTTTAGAACCTATAATGACTTTATGGGTTGCGATTTTAGTATTGTTTT
TAGCACTTGGAATTTTTTTACCTATATGGGAACTTAGCTCAGGAGTAAATTTTTAA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(262-381)

Type II secretion system (T2SS), protein F (T2SSF)

(59-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

60.66

100

0.611