Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   CEQ50_RS01205 Genome accession   NZ_CP022103
Coordinates   247415..248116 (-) Length   233 a.a.
NCBI ID   WP_088731488.1    Uniprot ID   -
Organism   Vibrio anguillarum strain CNEVA NB11008     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 242415..253116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ50_RS01175 (CEQ50_01175) gspL 242619..243830 (+) 1212 WP_013855430.1 type II secretion system protein GspL -
  CEQ50_RS01180 (CEQ50_01180) - 243841..244338 (+) 498 WP_013855429.1 type II secretion system protein M -
  CEQ50_RS01185 (CEQ50_01185) - 244335..245093 (+) 759 WP_088731484.1 type II secretion system protein N -
  CEQ50_RS01190 (CEQ50_01190) cysQ 245175..246002 (-) 828 WP_088731486.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  CEQ50_RS01195 (CEQ50_01195) nudE 246027..246572 (-) 546 WP_013855426.1 ADP compounds hydrolase NudE -
  CEQ50_RS01200 (CEQ50_01200) nfuA 246728..247315 (-) 588 WP_013855425.1 Fe-S biogenesis protein NfuA -
  CEQ50_RS01205 (CEQ50_01205) comF 247415..248116 (-) 702 WP_088731488.1 phosphoribosyltransferase family protein Machinery gene
  CEQ50_RS01210 (CEQ50_01210) bioH 248263..249027 (+) 765 WP_038148688.1 pimeloyl-ACP methyl ester esterase BioH -
  CEQ50_RS01215 (CEQ50_01215) - 249295..249765 (+) 471 WP_026027513.1 hypothetical protein -
  CEQ50_RS01220 (CEQ50_01220) - 249915..252245 (-) 2331 WP_088731490.1 Tex family protein -
  CEQ50_RS01225 (CEQ50_01225) greB 252589..253071 (+) 483 WP_010319306.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26689.07 Da        Isoelectric Point: 9.6283

>NTDB_id=236803 CEQ50_RS01205 WP_088731488.1 247415..248116(-) (comF) [Vibrio anguillarum strain CNEVA NB11008]
MLSHWVQKTITRLVSRQCLLCRLPIETHQTGAWCKTCLTYFSPQPRCQQCGLPTLITVPQCGQCLANPPPWQRLYCVGDY
IFPLSHTIHQLKYEGQFWQSRHLSALLTPRIDTPAPLITSVPLHWQRRLKRGFNQSALLASQLSQQLGASCDNQLIKRNR
ATPQQQGLSKLQRKQNLKHAFTLRHRPTHKHIALVDDVVTTGSTVQQICQLLLEVGVERIDIYCICRTPEPKD

Nucleotide


Download         Length: 702 bp        

>NTDB_id=236803 CEQ50_RS01205 WP_088731488.1 247415..248116(-) (comF) [Vibrio anguillarum strain CNEVA NB11008]
ATGTTATCGCATTGGGTTCAAAAAACCATCACTCGCTTGGTAAGCCGTCAGTGTCTACTGTGTCGTTTACCGATTGAAAC
TCACCAAACTGGGGCTTGGTGTAAGACCTGCCTAACCTATTTTTCACCGCAACCTCGCTGCCAACAGTGCGGCCTGCCAA
CGCTTATTACCGTGCCTCAATGCGGGCAATGTTTAGCGAATCCTCCGCCTTGGCAACGCCTATACTGTGTCGGCGACTAC
ATTTTTCCGCTCAGTCACACCATTCATCAACTCAAATATGAAGGTCAATTTTGGCAATCTCGTCATTTGAGTGCCTTACT
GACGCCACGTATCGACACTCCCGCCCCGCTCATCACTAGCGTTCCGTTGCACTGGCAACGGCGCTTAAAACGCGGATTCA
ATCAAAGTGCACTACTTGCCTCTCAATTAAGTCAACAACTGGGGGCTAGCTGCGATAACCAGTTGATCAAACGCAATCGC
GCAACGCCCCAGCAGCAAGGGCTTTCTAAATTACAGCGCAAACAAAATCTCAAACATGCATTCACACTACGGCACCGTCC
CACGCACAAGCACATTGCACTTGTTGACGATGTAGTGACCACGGGCAGCACCGTGCAGCAAATCTGTCAATTACTGCTTG
AAGTCGGTGTCGAAAGGATTGATATTTACTGCATATGCCGCACTCCTGAACCTAAAGATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(136-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

58.369

100

0.584
  comF Vibrio campbellii strain DS40M4

51.681

100

0.528

Multiple sequence alignment