Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   CEJ46_RS17770 Genome accession   NZ_CP022102
Coordinates   680772..681872 (-) Length   366 a.a.
NCBI ID   WP_064626227.1    Uniprot ID   -
Organism   Vibrio anguillarum strain JLL237     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 675772..686872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEJ46_RS17755 (CEJ46_17755) glpD 675839..677383 (+) 1545 WP_064626224.1 glycerol-3-phosphate dehydrogenase -
  CEJ46_RS17760 (CEJ46_17760) - 677527..678192 (+) 666 WP_064626225.1 PilZ domain-containing protein -
  CEJ46_RS17765 (CEJ46_17765) luxQ 678210..680756 (-) 2547 WP_088721555.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  CEJ46_RS17770 (CEJ46_17770) luxP 680772..681872 (-) 1101 WP_064626227.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  CEJ46_RS17775 (CEJ46_17775) - 682097..683248 (-) 1152 WP_017046397.1 conjugal transfer protein TraF -
  CEJ46_RS17780 (CEJ46_17780) - 683344..683667 (-) 324 WP_064626228.1 GIY-YIG nuclease family protein -
  CEJ46_RS17785 (CEJ46_17785) - 683668..684321 (-) 654 WP_064626229.1 YceH family protein -
  CEJ46_RS17790 (CEJ46_17790) - 684379..684582 (-) 204 WP_026028336.1 hypothetical protein -
  CEJ46_RS17795 (CEJ46_17795) - 684773..685090 (+) 318 WP_010319897.1 DUF496 family protein -
  CEJ46_RS17800 (CEJ46_17800) - 685400..685651 (+) 252 WP_013867916.1 YgjV family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 41594.18 Da        Isoelectric Point: 5.9863

>NTDB_id=236800 CEJ46_RS17770 WP_064626227.1 680772..681872(-) (luxP) [Vibrio anguillarum strain JLL237]
MRKILLLSFVFSVSLAASTQAAAQVLNGYWRYQEFLDLHPAQQALTDQMIQAVRQPPAVLSIEQDKPIHISVVYPGQQVS
DYWARNIKAFEMRLDELGIRYQINQVFTRPNVDIRQQSLSLMEAIRNKSDYLVFTLDTIRHRKFIEQLLSSNQTKIILQN
ITTPVKSWGDRQPFMYVGFDHEIGTMKLVDYYKKSAPKNSAYSVLYYSEGYVSDARGDSFIQEMSRDSKYHLASSFYTKA
TRDSAFDATLRILKQTPDINFIYACSTDVALGAMDALQQQNREDITLNGWGGGEAELDALQNSTLDVTIMRVNDDAGVAM
AEAIKWDLEGKPVPTVYSGGFELVTQEASLADIEKLKKRAFRYSDH

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=236800 CEJ46_RS17770 WP_064626227.1 680772..681872(-) (luxP) [Vibrio anguillarum strain JLL237]
ATGAGAAAAATCCTGCTCCTTTCATTTGTGTTCAGTGTCAGTTTGGCAGCCTCCACTCAGGCTGCAGCGCAAGTTTTAAA
TGGTTATTGGCGATATCAAGAGTTTTTAGATCTTCATCCTGCGCAACAGGCTCTTACCGACCAGATGATACAGGCAGTGC
GTCAACCTCCCGCTGTACTCTCAATAGAGCAAGATAAACCTATTCATATTTCTGTTGTTTATCCAGGTCAACAAGTTTCC
GATTATTGGGCGCGCAATATCAAAGCCTTTGAGATGCGTTTAGACGAACTTGGGATTAGATACCAAATTAACCAAGTCTT
CACTCGTCCGAATGTCGATATTCGCCAACAAAGTTTATCGTTGATGGAAGCGATCAGAAACAAATCCGATTACTTGGTGT
TTACGCTTGATACCATCCGCCACCGTAAATTTATCGAGCAGTTGTTAAGTTCAAATCAAACCAAAATTATTCTGCAAAAT
ATCACTACGCCGGTAAAAAGTTGGGGAGATCGCCAGCCTTTTATGTACGTGGGGTTTGATCATGAAATTGGCACAATGAA
ACTGGTGGATTACTACAAAAAGTCGGCGCCAAAGAATAGTGCTTATTCCGTACTCTATTATTCTGAAGGCTATGTTAGCG
ATGCTCGCGGTGATAGTTTTATCCAAGAAATGAGTCGAGACAGCAAATATCACTTGGCCTCTTCGTTTTATACAAAAGCG
ACACGAGATAGTGCATTTGATGCAACTTTGCGTATTCTTAAACAAACACCAGATATTAATTTTATTTACGCATGCTCTAC
TGATGTTGCACTCGGTGCCATGGATGCGTTGCAGCAGCAAAATAGAGAAGATATTACGTTAAACGGCTGGGGCGGTGGTG
AGGCTGAATTGGACGCGCTGCAAAATAGCACACTTGATGTGACTATCATGCGTGTCAATGATGATGCCGGTGTTGCTATG
GCGGAAGCCATTAAGTGGGATCTTGAAGGAAAGCCTGTACCTACGGTTTACTCTGGTGGTTTTGAGTTGGTAACCCAAGA
GGCTTCTTTAGCGGATATTGAAAAGCTCAAAAAAAGAGCATTTCGTTACTCTGACCATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(70-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

63.333

98.361

0.623

Multiple sequence alignment