Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   CEG15_RS01555 Genome accession   NZ_CP022099
Coordinates   310202..310849 (-) Length   215 a.a.
NCBI ID   WP_170895060.1    Uniprot ID   -
Organism   Vibrio anguillarum strain S3 4/9     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 305202..315849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEG15_RS01545 (CEG15_01545) uvrA 306224..309046 (-) 2823 WP_088721475.1 excinuclease ABC subunit UvrA -
  CEG15_RS01550 (CEG15_01550) galU 309215..310084 (-) 870 WP_013857894.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  CEG15_RS01555 (CEG15_01555) qstR 310202..310849 (-) 648 WP_170895060.1 LuxR C-terminal-related transcriptional regulator Regulator
  CEG15_RS01560 (CEG15_01560) ssb 311135..311665 (+) 531 WP_019282036.1 single-stranded DNA-binding protein Machinery gene
  CEG15_RS01565 (CEG15_01565) csrD 311795..313783 (+) 1989 WP_088720760.1 RNase E specificity factor CsrD -
  CEG15_RS01570 (CEG15_01570) - 313796..315238 (+) 1443 WP_088720761.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25051.76 Da        Isoelectric Point: 8.4691

>NTDB_id=236710 CEG15_RS01555 WP_170895060.1 310202..310849(-) (qstR) [Vibrio anguillarum strain S3 4/9]
MRKANYTRTIYFLCLDKEQEHPYIDHLTDRLGLPIPKIEPETLRQAYCSDKHKILMIDHADYAQLQRRLGNCPLNSQHHE
TILINVLQRLTTNDLLTFGHLKGLFYKNDTLDKIAFGLGEIINGQNWLPRHAVSQLLHYYRYAFESHTAQVITDLTAREI
QILRCLQTGASNNQMSEDLFISEFTVKSHLYQIFKKLSVKNRVQAIAWANQNILS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=236710 CEG15_RS01555 WP_170895060.1 310202..310849(-) (qstR) [Vibrio anguillarum strain S3 4/9]
ATGAGAAAAGCAAACTATACCCGCACCATTTACTTTCTCTGTTTAGATAAAGAGCAAGAACACCCTTATATTGACCATTT
AACCGATCGGCTTGGGCTGCCCATTCCTAAAATTGAGCCCGAAACCTTGCGCCAAGCGTATTGTTCAGATAAACACAAAA
TATTGATGATTGACCATGCCGATTATGCGCAGTTGCAACGACGCTTGGGAAACTGCCCATTAAACAGTCAGCATCATGAA
ACGATCCTCATCAATGTGTTGCAAAGATTAACCACGAATGACTTATTAACCTTTGGCCATTTAAAAGGGCTATTTTATAA
AAATGACACCTTAGATAAAATTGCATTTGGGCTTGGTGAAATCATTAACGGACAAAATTGGCTACCCAGACACGCTGTAA
GCCAGTTACTGCACTACTATCGCTACGCGTTTGAATCCCACACTGCTCAAGTGATTACAGACTTAACCGCCCGCGAAATA
CAGATCCTCCGCTGCTTACAAACTGGCGCATCGAATAACCAAATGTCGGAAGATTTATTCATCAGTGAATTCACGGTCAA
ATCACATCTCTACCAAATATTCAAAAAGCTATCGGTCAAAAATAGGGTCCAAGCGATTGCGTGGGCCAATCAAAATATTC
TGTCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

66.355

99.535

0.66
  qstR Vibrio campbellii strain DS40M4

53.023

100

0.53
  qstR Vibrio parahaemolyticus RIMD 2210633

52.093

100

0.521

Multiple sequence alignment