Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CEP86_RS11595 Genome accession   NZ_CP022097
Coordinates   2508961..2509470 (+) Length   169 a.a.
NCBI ID   WP_011063767.1    Uniprot ID   -
Organism   Pseudomonas protegens strain FDAARGOS_307     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2503961..2514470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEP86_RS11580 (CEP86_11530) bfr 2503961..2504425 (+) 465 WP_011063770.1 bacterioferritin -
  CEP86_RS11585 (CEP86_11535) uvrA 2504544..2507378 (-) 2835 WP_011063769.1 excinuclease ABC subunit UvrA -
  CEP86_RS11590 (CEP86_11540) - 2507557..2508951 (+) 1395 WP_011063768.1 MFS transporter -
  CEP86_RS11595 (CEP86_11545) ssb 2508961..2509470 (+) 510 WP_011063767.1 single-stranded DNA-binding protein Machinery gene
  CEP86_RS11600 (CEP86_11550) - 2509568..2510620 (-) 1053 WP_011063766.1 hypothetical protein -
  CEP86_RS11605 (CEP86_11555) - 2510635..2512461 (-) 1827 WP_011063765.1 hypothetical protein -
  CEP86_RS11610 (CEP86_11560) - 2512465..2513751 (-) 1287 WP_011063764.1 hypothetical protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18784.96 Da        Isoelectric Point: 5.9455

>NTDB_id=236677 CEP86_RS11595 WP_011063767.1 2508961..2509470(+) (ssb) [Pseudomonas protegens strain FDAARGOS_307]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVERTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPAPQPQRESRPAPQQAAPQPAPDF
DSFDDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=236677 CEP86_RS11595 WP_011063767.1 2508961..2509470(+) (ssb) [Pseudomonas protegens strain FDAARGOS_307]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAGCAGTGGACCGACAAGCAGACCGGTCAGAAGGTCGAGCGCACCGAGT
GGCACCGCGTGTCGATGTTCGGCAAGGTCGCGGAGATCGCCGGTGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAG
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGCTACACCACCGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGTGGCCGTCCACAGGGCGACCAGCAAGGCCAGGGCGGCATGTCCAACTCGGCACCGCGTCCACAGC
AGTCCCGTCCTGCTCCGCAGCCACAGCGTGAGTCGCGTCCAGCGCCACAGCAGGCCGCTCCGCAGCCGGCTCCGGACTTC
GACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.932

100

0.586
  ssb Glaesserella parasuis strain SC1401

48.066

100

0.515
  ssb Neisseria gonorrhoeae MS11

47.727

100

0.497
  ssb Neisseria meningitidis MC58

47.159

100

0.491

Multiple sequence alignment