Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   MMP_RS03810 Genome accession   NC_005791
Coordinates   719441..721024 (-) Length   527 a.a.
NCBI ID   WP_011170672.1    Uniprot ID   Q6LZA1
Organism   Methanococcus maripaludis S2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 714441..726024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMP_RS03780 (MMP0722) - 714749..715381 (+) 633 WP_011170666.1 4Fe-4S binding protein -
  MMP_RS03785 (MMP0723) - 715399..715743 (+) 345 WP_011170667.1 cupin domain-containing protein -
  MMP_RS03790 (MMP0724) - 715883..716317 (+) 435 WP_232500696.1 hypothetical protein -
  MMP_RS03795 (MMP0725) - 716325..716882 (-) 558 WP_011170669.1 YqhA family protein -
  MMP_RS03800 (MMP0726) - 717235..717468 (+) 234 WP_013998910.1 hypothetical protein -
  MMP_RS03805 (MMP0727) uvrB 717504..719444 (-) 1941 WP_011170671.1 excinuclease ABC subunit UvrB Machinery gene
  MMP_RS03810 (MMP0728) uvrC 719441..721024 (-) 1584 WP_011170672.1 excinuclease ABC subunit UvrC Machinery gene
  MMP_RS03815 (MMP0729) uvrA 721032..723887 (-) 2856 WP_011170673.1 excinuclease ABC subunit UvrA Machinery gene
  MMP_RS03820 (MMP0730) - 724013..724432 (-) 420 WP_011170674.1 EamA family transporter -
  MMP_RS03825 (MMP0731) - 724442..724645 (-) 204 WP_011170675.1 exodeoxyribonuclease VII small subunit -
  MMP_RS03830 (MMP0732) xseA 724668..725891 (-) 1224 WP_011170676.1 exodeoxyribonuclease VII large subunit -

Sequence

Protein


Download         Length: 527 a.a.        Molecular weight: 61367.96 Da        Isoelectric Point: 9.7728

>NTDB_id=23636 MMP_RS03810 WP_011170672.1 719441..721024(-) (uvrC) [Methanococcus maripaludis S2]
MINISDIPKNPGCYIYKNESGTVIYVGKAKNLKKRVSSYFNKKNHDPKTEKLVKSIYEMEFIVTDNEVEALILENTLIKK
YSPKYNIDLKDSKNYAYIYISEENFPRIGISRNKSKKGKFYGPFTSAKERDYVLDVLKKTFKIRSCKNMHKRPCLRHHIK
NCTAPCSGDITSKDYLNQIKKAEHILKGNIDSLIHELKNEMNEKSKNLQFEEALLIREEINAIERLKTRQNVKRDVKYNE
DVISILEKSGKLHIMVFNVLKGTLFDRKYFEFDYTENFFEEFLIQYYSENDVPSEIIISELPKNLEEDNNEYSSDALLEY
LSKKKGSKVAFKIPKQGEKKQLLDLAIKNLEIYVNGNEIKVQSLKNKLMLDKSPNIIECFDISHLSGTSTVGSVVQFRNG
KPDKKNYRRFKIKTVSGIDDFKSISEVVFRRYSKLLEENLELPDLIIIDGGKGQLSSAFSELRKLKLKIPLISIAKREEE
IYTPGIENPLPIKKNEKASLFIQEIRDEAHRFAINYNRLLRKKELIK

Nucleotide


Download         Length: 1584 bp        

>NTDB_id=23636 MMP_RS03810 WP_011170672.1 719441..721024(-) (uvrC) [Methanococcus maripaludis S2]
ATGATAAATATTTCAGATATTCCAAAAAATCCGGGCTGTTATATTTATAAAAACGAATCCGGAACTGTAATTTATGTTGG
GAAAGCAAAAAACTTGAAAAAAAGAGTTAGTAGCTACTTTAACAAAAAAAATCACGATCCTAAAACCGAAAAACTTGTAA
AATCAATTTACGAGATGGAATTTATCGTAACAGATAACGAAGTCGAAGCTTTGATTTTAGAAAATACGTTAATCAAAAAA
TACAGTCCTAAATACAATATCGACTTAAAAGACTCGAAAAATTACGCATATATATACATTAGCGAAGAAAATTTCCCAAG
AATTGGAATATCGAGAAATAAATCAAAAAAAGGAAAATTTTATGGGCCATTTACTTCTGCAAAGGAAAGAGATTATGTTT
TGGATGTTTTAAAAAAGACATTTAAAATCAGGTCATGCAAAAACATGCACAAACGTCCCTGTTTAAGGCACCATATAAAA
AACTGCACTGCACCATGTAGTGGTGACATAACCTCCAAAGATTATTTGAATCAGATAAAAAAGGCAGAACATATTTTAAA
AGGAAATATTGATTCACTAATTCACGAACTTAAAAACGAGATGAATGAAAAATCAAAAAATCTGCAGTTTGAAGAAGCTT
TATTGATTAGAGAAGAAATAAATGCAATTGAAAGACTTAAGACTCGTCAAAACGTTAAAAGAGATGTAAAATATAATGAA
GATGTAATCAGCATCCTTGAAAAAAGCGGAAAACTCCATATAATGGTTTTTAATGTACTAAAAGGAACACTTTTTGATAG
AAAATACTTTGAATTTGATTACACAGAAAATTTCTTTGAAGAGTTTTTAATTCAATACTATTCAGAAAACGACGTTCCTT
CAGAAATTATAATTTCAGAGCTGCCTAAAAATCTTGAAGAAGATAATAATGAATACAGTTCTGATGCACTCTTAGAATAT
CTGTCAAAAAAGAAAGGTTCAAAAGTTGCTTTTAAAATCCCTAAACAAGGCGAGAAAAAACAGCTTTTAGACCTTGCTAT
AAAAAATCTTGAAATTTATGTTAATGGAAATGAAATAAAAGTTCAAAGCTTAAAAAACAAACTAATGCTTGATAAAAGTC
CAAACATAATAGAATGCTTTGATATATCACACCTTTCAGGAACATCTACTGTTGGATCAGTGGTCCAGTTTAGAAATGGA
AAACCTGACAAAAAAAATTATCGCAGATTTAAAATAAAAACAGTTTCAGGAATAGATGACTTCAAATCCATTTCTGAAGT
GGTATTTAGGCGATACAGCAAATTACTCGAAGAAAATTTGGAATTGCCTGATTTAATAATTATTGATGGTGGAAAAGGCC
AGCTTTCGTCAGCATTTTCTGAACTTCGAAAATTAAAACTTAAAATTCCGCTAATTTCAATCGCAAAACGTGAAGAAGAA
ATTTACACTCCAGGAATTGAAAATCCTCTTCCAATAAAGAAAAATGAAAAAGCATCCCTATTTATTCAAGAAATTCGTGA
TGAAGCACATAGATTTGCAATAAATTATAATCGATTACTTAGGAAAAAGGAATTGATAAAATGA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(192-225)

GIY-YIG catalytic domain (GIY-YIG)

(11-86)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(366-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6LZA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae R6

38.93

100

0.4
  uvrC Streptococcus pneumoniae D39

38.93

100

0.4
  uvrC Streptococcus pneumoniae TIGR4

38.93

100

0.4

Multiple sequence alignment