Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   MMP_RS03815 Genome accession   NC_005791
Coordinates   721032..723887 (-) Length   951 a.a.
NCBI ID   WP_011170673.1    Uniprot ID   Q6LZA0
Organism   Methanococcus maripaludis S2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 716032..728887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMP_RS03795 (MMP0725) - 716325..716882 (-) 558 WP_011170669.1 YqhA family protein -
  MMP_RS03800 (MMP0726) - 717235..717468 (+) 234 WP_013998910.1 hypothetical protein -
  MMP_RS03805 (MMP0727) uvrB 717504..719444 (-) 1941 WP_011170671.1 excinuclease ABC subunit UvrB Machinery gene
  MMP_RS03810 (MMP0728) uvrC 719441..721024 (-) 1584 WP_011170672.1 excinuclease ABC subunit UvrC Machinery gene
  MMP_RS03815 (MMP0729) uvrA 721032..723887 (-) 2856 WP_011170673.1 excinuclease ABC subunit UvrA Machinery gene
  MMP_RS03820 (MMP0730) - 724013..724432 (-) 420 WP_011170674.1 EamA family transporter -
  MMP_RS03825 (MMP0731) - 724442..724645 (-) 204 WP_011170675.1 exodeoxyribonuclease VII small subunit -
  MMP_RS03830 (MMP0732) xseA 724668..725891 (-) 1224 WP_011170676.1 exodeoxyribonuclease VII large subunit -
  MMP_RS03835 (MMP0733) - 725998..727350 (-) 1353 WP_011170677.1 MATE family efflux transporter -
  MMP_RS03840 (MMP0734) - 727487..727804 (+) 318 WP_011170678.1 hypothetical protein -
  MMP_RS03845 (MMP0735) - 727879..728799 (+) 921 WP_011170679.1 DNA adenine methylase -

Sequence

Protein


Download         Length: 951 a.a.        Molecular weight: 106284.49 Da        Isoelectric Point: 7.0678

>NTDB_id=23637 MMP_RS03815 WP_011170673.1 721032..723887(-) (uvrA) [Methanococcus maripaludis S2]
MKDIIIKGAREHNLKNISLTLPRNNLIVVTGVSGSGKSTIAFDTIYAEGQRRYVESLSAYARQFLGLMNKPDVDSIEGLS
PAIAIQQKTTSKNPRSTVGTVTEIYDYLRLLYARIGIPYCPEHNIRIESQSPEKIAEKIEEEFSETVTILSPIVRQKKGT
YQKLFKDLNSEGFARIRVNGEIYRTDDEITLERYKKHDIEIVIDRLTPKDDHSRLVEACERALERSGGLLIVTGTKNNEE
IEKIYSSNLACPICGISFEELQPRMFSFNSPFGACEYCSGLGIKMEFDADLIIPDKNKCIADGAVALYRNFLDGYRSQHL
AAVANHFGFTVLTPIKDLSKEQLDILMYGSPEKIHFKVSNGSGDTEWSQNKPWEGLIPQSIRLYNETKSEYRRKELEKFM
KVSLCPKCGGKRLKDKALAVKIEDKSIIDLTDLSISKAEEFFNNLKLTDKEYEIAKQVIKEIKSRLKFLNDVGLGYLTLS
RRSGTLSGGEAQRIRLATQIGSNLTGVLYVLDEPSIGLHQRDNQKLIETLHKLRNLDNTLVVVEHDEDTILNADYVVDMG
PGAGVHGGDVVAVGTPMEISKNKDSLTGKYLSGELKIEIPKNRRKSDKFLKLSNCRQNNLKDVSVEIPTGVFNVITGVSG
SGKSTLIYENLYPALKEKIKSDESVGELDFEDQLYENTKEKCNLEINSEIDKVVVIDQSPIGRTPRSNPATYTKVFDKIR
QVFAETKEAKIKGYGPGRFSFNVKGGRCENCQGDGVIKIEMNFLPDVFVECEECKGARYNHETLEVKYKGKSISDVLNMS
VEEAREHFKNIPQISNKLKTLCDVGLGYIKLGQSSTTLSGGEAQRIKLTRELSKRATGNTIYLLDEPTTGLHFHDVKKLI
DVLNSLVEKGNTVVVIEHNLDVIKCADHIIDLGPEGGEFGGEIIATGTPEEIAKCKLSHTGKFLKNILSKN

Nucleotide


Download         Length: 2856 bp        

>NTDB_id=23637 MMP_RS03815 WP_011170673.1 721032..723887(-) (uvrA) [Methanococcus maripaludis S2]
ATGAAAGATATCATCATAAAAGGCGCAAGAGAACATAATTTAAAAAATATCTCGCTAACACTCCCAAGAAATAATTTAAT
AGTTGTAACCGGAGTTTCTGGTTCTGGAAAGTCCACGATAGCATTTGATACAATTTACGCAGAAGGTCAGAGAAGGTATG
TTGAATCACTTTCAGCATATGCACGACAGTTTTTAGGGCTTATGAATAAACCTGATGTTGACAGTATCGAAGGATTATCT
CCTGCAATTGCGATACAGCAGAAAACAACGAGCAAAAACCCAAGAAGTACCGTTGGAACGGTTACTGAAATTTATGACTA
CTTAAGACTGCTTTACGCAAGAATTGGAATTCCATACTGTCCCGAACACAATATTAGAATAGAATCACAGAGTCCTGAAA
AAATAGCTGAAAAAATCGAAGAAGAATTTTCTGAAACTGTGACGATATTGTCCCCAATTGTGAGGCAGAAAAAAGGAACC
TATCAAAAACTCTTTAAAGACTTAAATTCTGAAGGTTTTGCAAGAATTCGTGTAAATGGCGAAATTTACAGAACTGATGA
CGAAATAACACTTGAAAGATATAAAAAACATGATATTGAAATTGTTATCGATAGATTAACTCCAAAAGACGACCATTCAA
GGCTTGTTGAAGCCTGTGAAAGAGCACTTGAACGTTCAGGCGGACTTTTGATTGTGACGGGCACTAAAAATAACGAAGAA
ATTGAAAAAATTTATTCTTCAAATTTAGCATGTCCAATTTGCGGTATTTCGTTTGAAGAGCTTCAGCCGAGAATGTTTTC
ATTTAACAGCCCATTTGGTGCATGTGAATACTGTAGCGGTCTTGGAATAAAAATGGAGTTTGATGCGGACTTAATAATCC
CTGATAAAAATAAATGCATTGCTGATGGTGCAGTTGCACTTTACAGAAACTTCCTTGATGGATACAGGTCACAACATTTG
GCGGCCGTTGCAAACCACTTTGGATTTACGGTTTTAACGCCGATAAAAGACCTTTCAAAAGAACAGCTTGACATTTTGAT
GTACGGAAGTCCTGAAAAAATTCATTTTAAAGTATCAAACGGCAGTGGGGATACCGAATGGAGCCAGAATAAACCGTGGG
AAGGGCTTATCCCTCAATCAATTAGACTTTACAATGAAACCAAATCAGAATACCGAAGAAAAGAACTTGAAAAGTTCATG
AAAGTTAGTTTGTGCCCAAAATGTGGCGGAAAACGTTTAAAAGATAAAGCCCTTGCTGTAAAAATAGAAGATAAATCAAT
TATCGATTTAACGGATCTTTCAATTTCAAAAGCGGAAGAATTTTTTAATAATTTAAAATTAACAGATAAAGAATATGAAA
TTGCAAAACAGGTCATAAAAGAAATAAAATCAAGATTAAAATTCTTAAATGACGTTGGTTTGGGATATTTAACACTTTCG
AGACGATCAGGAACGCTTTCTGGAGGAGAAGCTCAGAGGATAAGACTTGCAACCCAGATTGGTTCAAACTTAACTGGTGT
TTTGTACGTACTTGATGAACCATCAATTGGACTTCACCAGCGAGATAATCAAAAATTAATCGAAACACTCCATAAATTAA
GAAATTTAGATAATACCCTCGTTGTTGTTGAACATGACGAAGATACAATTTTAAATGCAGATTATGTCGTAGATATGGGC
CCGGGTGCTGGAGTTCATGGCGGAGATGTTGTTGCAGTTGGAACACCGATGGAAATTTCAAAAAATAAGGATTCATTAAC
TGGAAAATACCTCTCAGGAGAATTAAAAATTGAAATACCAAAAAATAGAAGAAAAAGCGATAAATTCTTAAAACTTTCAA
ATTGCAGACAGAACAATTTAAAAGATGTATCTGTTGAAATTCCAACCGGAGTATTTAACGTGATTACAGGAGTTTCTGGA
AGCGGAAAATCCACTTTAATTTATGAAAACTTGTATCCTGCATTAAAAGAAAAAATAAAATCTGATGAGAGTGTTGGGGA
ACTTGATTTTGAGGATCAGCTCTACGAAAATACTAAAGAAAAATGCAATCTTGAAATTAACTCAGAAATCGATAAAGTCG
TTGTAATAGACCAGAGCCCGATTGGAAGAACCCCTAGATCAAACCCTGCAACTTACACGAAAGTATTTGATAAAATCAGA
CAGGTTTTTGCAGAAACCAAAGAAGCAAAGATAAAGGGATATGGGCCAGGAAGGTTCTCCTTTAACGTGAAAGGAGGGCG
CTGTGAAAACTGTCAGGGCGATGGAGTTATAAAAATAGAAATGAACTTTTTGCCAGACGTTTTTGTGGAATGTGAAGAGT
GTAAAGGTGCTAGATACAACCACGAAACTCTTGAAGTAAAATATAAAGGAAAATCTATCTCAGATGTTTTAAACATGAGT
GTTGAGGAAGCAAGAGAGCATTTCAAAAATATTCCGCAGATTTCAAATAAATTAAAAACTTTGTGCGATGTTGGACTTGG
ATACATTAAATTAGGACAGAGTTCGACAACACTTTCGGGTGGAGAAGCTCAGAGAATTAAATTAACAAGGGAATTATCCA
AAAGAGCTACGGGAAACACCATATATTTACTCGATGAACCGACAACAGGACTTCACTTCCACGATGTTAAAAAATTAATC
GATGTTTTAAACAGCCTCGTTGAAAAAGGAAATACTGTAGTTGTAATCGAACATAACCTCGATGTAATAAAATGTGCCGA
CCACATAATCGACCTTGGACCTGAAGGCGGGGAATTTGGTGGCGAAATAATTGCAACAGGAACTCCTGAAGAAATTGCAA
AATGTAAATTAAGCCATACTGGAAAATTCTTAAAAAACATTCTTTCCAAAAATTAA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(130-233)

ABC transporter (ABC_tran)

(620-868)

UvrA DNA-binding domain (UvrA_DNA-bind)

(288-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6LZA0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

54.232

100

0.546
  uvrA Streptococcus pneumoniae TIGR4

54.232

100

0.546
  uvrA Streptococcus pneumoniae D39

54.232

100

0.546

Multiple sequence alignment