Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   CEQ03_RS19215 Genome accession   NZ_CP022053
Coordinates   4094716..4095774 (+) Length   352 a.a.
NCBI ID   WP_088611169.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain FDAARGOS_325     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4089716..4100774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ03_RS19200 (CEQ03_19070) - 4090223..4090966 (+) 744 WP_049461159.1 hypothetical protein -
  CEQ03_RS19205 (CEQ03_19075) - 4091122..4091766 (-) 645 WP_049461162.1 hypothetical protein -
  CEQ03_RS19210 (CEQ03_19080) - 4092073..4094496 (-) 2424 WP_049461164.1 penicillin-binding protein 1A -
  CEQ03_RS19215 (CEQ03_19085) pilM 4094716..4095774 (+) 1059 WP_088611169.1 pilus assembly protein PilM Machinery gene
  CEQ03_RS19220 (CEQ03_19090) - 4095774..4096646 (+) 873 WP_005414347.1 PilN domain-containing protein -
  CEQ03_RS19225 (CEQ03_19095) pilO 4096643..4097299 (+) 657 WP_049461166.1 type 4a pilus biogenesis protein PilO -
  CEQ03_RS19230 (CEQ03_19100) - 4097326..4097829 (+) 504 WP_044571441.1 pilus assembly protein PilP -
  CEQ03_RS19235 (CEQ03_19105) - 4097851..4099818 (+) 1968 WP_005410855.1 type IV pilus secretin PilQ -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37762.42 Da        Isoelectric Point: 4.4501

>NTDB_id=236237 CEQ03_RS19215 WP_088611169.1 4094716..4095774(+) (pilM) [Stenotrophomonas maltophilia strain FDAARGOS_325]
MGLIPKSQSPLVGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAMNRSGSKAKLAAAA
VAGSAVITKVIPMPAELDENDMEAQIELEAVNYIPYPIEEVHLDFEVIGAIPNNPEMVQVLLAASRSENVELRQSALELG
GLQAKVMDVEAFAVENAYALVASELPVSIDGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEIMRRYGLSYEE
AGLAKRQGGLPESYEMEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAVLGGLPEMVEEQLGVPTVVANPLA
QMTLGPKVNAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=236237 CEQ03_RS19215 WP_088611169.1 4094716..4095774(+) (pilM) [Stenotrophomonas maltophilia strain FDAARGOS_325]
GTGGGGCTCATCCCAAAAAGTCAGTCGCCGCTTGTAGGCGTCGACATCAGTTCGACTGCGGTAAAGCTTTTGCAGCTGTC
CCGCAGCGGCAATCGTTTCCGTGTGGAACATTACGCTGTGGAACCTCTTCCGCCGAATGCGGTGGTAGAGAAGAACATCG
TGGAAGTGGAGGCCGTGGGTGAGGCCATCCGCCGTGCGATGAACCGTTCAGGCAGCAAGGCCAAGCTGGCCGCTGCCGCC
GTCGCCGGGTCGGCGGTGATCACCAAGGTGATCCCGATGCCGGCCGAGCTCGACGAGAACGACATGGAAGCCCAGATCGA
GCTGGAAGCGGTCAACTACATTCCGTACCCGATCGAGGAAGTGCACCTGGACTTCGAGGTGATCGGGGCGATCCCGAACA
ACCCGGAGATGGTCCAGGTGCTGCTGGCCGCGTCGCGTTCGGAGAACGTGGAACTGCGCCAGTCGGCCCTGGAACTGGGT
GGCCTGCAGGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTACGCCCTGGTCGCCAGCGAGCTGCCGGT
GTCCATCGACGGCGTGGTCGCGCTGGTCGATATCGGCGCCACCATGACCACCCTCAACGTCCTGCGCGGCGGCCGCAGCC
TGTACAGCCGCGAACAGGTGTTCGGTGGCAAGCAGCTGACCGACGAGATCATGCGCCGTTACGGCCTGAGCTACGAGGAG
GCCGGCTTGGCCAAGCGCCAGGGCGGACTGCCGGAAAGCTACGAGATGGAAGTGCTGGAGCCGTTCAAGGAAGCCACGGT
CCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTATGCAGGCAGTGAGTTCAACCGCGTTGATCACATCGTGCTGGCCGGCG
GCTGCGCCGTGCTGGGCGGGCTGCCGGAAATGGTCGAGGAACAGCTGGGCGTGCCGACCGTGGTCGCCAACCCGCTGGCA
CAGATGACGTTGGGCCCGAAGGTGAACGCGCATGCGCTGGCCCAGGATGCCCCCGCGCTGATGATCGCCACCGGTCTGGC
GCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.136

100

0.511
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  comM Acinetobacter baylyi ADP1

50

100

0.5
  pilM Legionella pneumophila strain ERS1305867

47.989

98.864

0.474

Multiple sequence alignment