Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CEP68_RS19675 Genome accession   NZ_CP022048
Coordinates   520665..521162 (-) Length   165 a.a.
NCBI ID   WP_066626160.1    Uniprot ID   A0A1Z3U5H8
Organism   Brevundimonas vesicularis strain FDAARGOS_289     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 515665..526162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEP68_RS19645 (CEP68_02725) - 516254..516829 (+) 576 WP_066626152.1 superoxide dismutase family protein -
  CEP68_RS19650 (CEP68_02730) - 516869..517402 (-) 534 WP_066550836.1 DUF1003 domain-containing protein -
  CEP68_RS19655 (CEP68_02735) - 517432..518370 (-) 939 WP_066626153.1 DMT family transporter -
  CEP68_RS19660 (CEP68_02740) - 518434..518904 (-) 471 WP_066626154.1 DUF2269 family protein -
  CEP68_RS19665 (CEP68_02745) - 518901..520190 (-) 1290 WP_240612115.1 SDR family oxidoreductase -
  CEP68_RS19670 (CEP68_02750) - 520199..520654 (-) 456 WP_066626158.1 thiol-disulfide oxidoreductase DCC family protein -
  CEP68_RS19675 (CEP68_02755) ssb 520665..521162 (-) 498 WP_066626160.1 single-stranded DNA-binding protein Machinery gene
  CEP68_RS19680 (CEP68_02760) - 521331..521756 (-) 426 WP_066626166.1 hypothetical protein -
  CEP68_RS19685 (CEP68_02765) - 521756..522427 (-) 672 WP_066626168.1 hypothetical protein -
  CEP68_RS19690 (CEP68_02770) - 522509..525217 (-) 2709 WP_066626170.1 transcriptional regulator -
  CEP68_RS19695 (CEP68_02775) - 525278..526102 (-) 825 WP_066626172.1 flagellin -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17845.69 Da        Isoelectric Point: 5.9696

>NTDB_id=236174 CEP68_RS19675 WP_066626160.1 520665..521162(-) (ssb) [Brevundimonas vesicularis strain FDAARGOS_289]
MAGSVNKVILVGNLGRDPEIRSMPNGDRIANLSIATSETWRDKSSGERKEKTEWHRVVIFNDNIVKVVENYVKKGSTVYI
EGALQTRKWTDQQGVEKYSTEIVVSRFKGELTMLGGRSEGGSSGGGYGSGGGRGDDDYSSGFSTGGANKPSGPKESYDLN
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=236174 CEP68_RS19675 WP_066626160.1 520665..521162(-) (ssb) [Brevundimonas vesicularis strain FDAARGOS_289]
ATGGCGGGCAGCGTCAACAAGGTCATTCTGGTCGGCAATCTGGGTCGCGACCCAGAGATCCGCTCCATGCCCAACGGCGA
CCGCATCGCCAACCTGTCCATCGCCACCTCGGAAACCTGGCGCGACAAGTCCTCGGGCGAGCGCAAGGAAAAGACCGAGT
GGCACCGGGTCGTCATCTTCAACGACAACATCGTCAAAGTGGTCGAAAACTATGTGAAGAAGGGCTCGACCGTCTACATC
GAGGGCGCGCTCCAGACCCGCAAATGGACCGACCAGCAGGGCGTCGAAAAGTACTCGACCGAGATCGTCGTCAGCCGCTT
CAAGGGTGAGCTGACCATGCTGGGCGGCCGTTCGGAAGGCGGCTCGTCGGGCGGTGGTTACGGCAGCGGCGGTGGTCGCG
GCGATGACGACTATTCCTCGGGCTTCTCCACCGGCGGCGCCAACAAGCCGAGCGGCCCCAAGGAAAGCTACGACCTGAAC
GACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Z3U5H8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.09

100

0.539
  ssb Vibrio cholerae strain A1552

48

100

0.509
  ssb Neisseria meningitidis MC58

40

100

0.436
  ssb Neisseria gonorrhoeae MS11

40

100

0.436

Multiple sequence alignment