Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CEP87_RS05820 Genome accession   NZ_CP022043
Coordinates   1363050..1364105 (-) Length   351 a.a.
NCBI ID   WP_011514486.1    Uniprot ID   Q1Q8Q3
Organism   Psychrobacter cryohalolentis strain FDAARGOS_308     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1358050..1369105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEP87_RS05800 (CEP87_05805) pilQ 1358712..1361090 (-) 2379 WP_011514482.1 type IV pilus secretin PilQ -
  CEP87_RS05805 (CEP87_05810) - 1361118..1361657 (-) 540 WP_011514483.1 pilus assembly protein PilP -
  CEP87_RS05810 (CEP87_05815) - 1361657..1362388 (-) 732 WP_011514484.1 type 4a pilus biogenesis protein PilO -
  CEP87_RS05815 (CEP87_05820) - 1362385..1363050 (-) 666 WP_011514485.1 PilN domain-containing protein -
  CEP87_RS05820 (CEP87_05825) comM 1363050..1364105 (-) 1056 WP_011514486.1 pilus assembly protein PilM Machinery gene
  CEP87_RS05825 (CEP87_05830) - 1364301..1366994 (+) 2694 WP_011514487.1 penicillin-binding protein 1A -
  CEP87_RS05830 (CEP87_05835) - 1367173..1367697 (-) 525 WP_011514488.1 DUF6586 family protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 38209.37 Da        Isoelectric Point: 4.4164

>NTDB_id=236080 CEP87_RS05820 WP_011514486.1 1363050..1364105(-) (comM) [Psychrobacter cryohalolentis strain FDAARGOS_308]
MRLFTSKSRHLIGVDICTTSVKLVDIQRQQGVFHLRSYGTEILPEGVVIDKLIVDTEVVGNTIAGLARRCQAAGSSAATA
VSGSAVITKIIDMDMVLSDVEREAQIRLDADQYIPYPLEDVNLDFEVLGPSLINDDMVQVLLAASRSENVDQRVDALTFG
GLQTKVMDIESHAIERAFGLMADSLPNLPDLVALVDIGHNQTTLYVAKNGEFIYSREQLFGGNQLTEAIQNRYGLSAEEA
SISKRERALPDDYYTDVLTPFIENTIQQITRSLQFYFSSSQYSSIDHVVLAGGSSSIAGLAGMAQQRLGVPVSIANPFIN
MTIAPHIDHEQLAIDAPSLMAACGLALRSFD

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=236080 CEP87_RS05820 WP_011514486.1 1363050..1364105(-) (comM) [Psychrobacter cryohalolentis strain FDAARGOS_308]
GTGAGGCTATTTACTTCTAAGAGTCGACATTTGATTGGCGTGGATATCTGTACCACCTCAGTGAAGTTGGTTGACATACA
GCGCCAACAAGGCGTTTTCCACCTAAGATCTTATGGTACTGAAATATTACCTGAAGGCGTAGTCATCGACAAACTCATTG
TAGACACGGAAGTGGTAGGCAATACTATAGCAGGCTTGGCAAGGCGTTGCCAAGCGGCGGGTAGTAGTGCAGCCACAGCA
GTCTCAGGATCAGCGGTGATTACTAAAATCATCGATATGGATATGGTGCTAAGTGACGTTGAGCGTGAAGCTCAAATTCG
TTTGGATGCTGACCAATACATACCTTATCCGCTAGAAGACGTCAATTTGGACTTTGAAGTATTGGGTCCCTCTCTTATTA
ATGATGACATGGTGCAAGTACTGCTTGCCGCCTCTCGTTCAGAAAACGTTGACCAAAGAGTTGATGCCTTAACCTTTGGT
GGTCTGCAAACCAAGGTAATGGATATTGAGTCGCATGCCATTGAGCGTGCTTTTGGCTTGATGGCAGACAGTCTGCCAAA
CTTGCCAGATTTGGTGGCGCTGGTTGATATCGGACACAATCAAACAACATTATATGTCGCCAAAAATGGCGAGTTTATCT
ATAGTCGTGAGCAGTTATTTGGAGGCAATCAGCTGACGGAAGCCATCCAAAACCGCTATGGTTTGTCTGCTGAAGAAGCT
TCTATTAGTAAGCGCGAGCGTGCTCTACCTGATGATTATTATACTGATGTCTTAACACCATTTATAGAAAATACCATCCA
ACAAATCACTCGCTCTTTACAGTTTTATTTCTCCTCAAGTCAATATAGTAGTATCGATCATGTGGTCCTTGCTGGTGGCA
GTAGCTCTATTGCGGGTCTTGCTGGTATGGCGCAGCAGCGATTGGGCGTGCCTGTGAGTATTGCAAATCCGTTCATTAAT
ATGACTATTGCGCCGCATATCGATCATGAGCAACTGGCGATTGATGCACCCAGCTTAATGGCCGCTTGCGGTCTGGCGTT
AAGGAGCTTTGACTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q1Q8Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

51.282

100

0.513
  pilM Acinetobacter baumannii D1279779

51.282

100

0.513
  comM Acinetobacter baylyi ADP1

48.148

100

0.481
  pilM Legionella pneumophila strain ERS1305867

41.076

100

0.413

Multiple sequence alignment