Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   TRNA_RS40145 Genome accession   NC_006270
Coordinates   3608335..3609729 (-) Length   464 a.a.
NCBI ID   WP_003185720.1    Uniprot ID   A0AB37GV19
Organism   Bacillus licheniformis DSM 13 = ATCC 14580     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3603335..3614729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TRNA_RS40110 (BL03370) flgL 3603525..3604436 (-) 912 WP_003185705.1 flagellar hook-associated protein FlgL -
  TRNA_RS40115 (BL03369) flgK 3604447..3605970 (-) 1524 WP_003185709.1 flagellar hook-associated protein FlgK -
  TRNA_RS40120 (BL03368) - 3605986..3606462 (-) 477 WP_003185711.1 flagellar protein FlgN -
  TRNA_RS40125 (BL03367) flgM 3606481..3606747 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  TRNA_RS40130 (BL03366) - 3606827..3607246 (-) 420 WP_003185715.1 TIGR03826 family flagellar region protein -
  TRNA_RS40135 (BL03365) comFC 3607305..3608039 (-) 735 WP_011198352.1 amidophosphoribosyltransferase Machinery gene
  TRNA_RS40140 (BL03364) - 3607996..3608280 (-) 285 WP_003185718.1 late competence development ComFB family protein -
  TRNA_RS40145 (BL03363) comFA 3608335..3609729 (-) 1395 WP_003185720.1 DEAD/DEAH box helicase Machinery gene
  TRNA_RS40150 (BL03362) - 3609850..3610692 (-) 843 WP_003185726.1 DegV family protein -
  TRNA_RS40155 (BL03361) degU 3610812..3611501 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  TRNA_RS40160 (BL03360) degS 3611583..3612740 (-) 1158 WP_003185733.1 sensor histidine kinase Regulator
  TRNA_RS40165 (BL03593) - 3612954..3613592 (+) 639 WP_011198353.1 YigZ family protein -
  TRNA_RS40170 (BL03592) - 3613607..3614683 (+) 1077 WP_003185737.1 LCP family protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 52848.50 Da        Isoelectric Point: 9.9576

>NTDB_id=23599 TRNA_RS40145 WP_003185720.1 3608335..3609729(-) (comFA) [Bacillus licheniformis DSM 13 = ATCC 14580]
MIHIEQPAFYTRELRSCLEQRHLLKSELPFRESVVDWHIQEGLIKTEEGIKKTKKGFICLRCGQHERSFFARYPCYRCSK
CCVYCRSCVMMGRVSDCTPLLTWHMHVSHKWAPVHTEWKGALSAGQEKAAKSIINAIRRKEELLVWAVCGSGKTELLFQG
IEFALNNGLTVCIATPRTDVVLELAPRFRQAFPGVEIAALYGGSSDVGNLSPLIISTTHQLLRYKEAFDVIIIDEVDAFP
YSIDNTLQYAVKKSAKRQSAHIYLTATPSADMKKRAESGKLDTVRIPARFHRSPLPEPTLIWCGNWKKSLKRRKVPFRLK
KWLFKHQELQQPVFLFVPSVPVLKSVVSVLKKETFRAEGVYADDPDRNEKVNRFRESKLEVLVTTTILERGVTVKKAQVG
VLGAESAVFTESALVQMAGRAGRHPEHTDGDVCFFHYGRTKSMNAARRHIQNMNKMSKKEMLID

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=23599 TRNA_RS40145 WP_003185720.1 3608335..3609729(-) (comFA) [Bacillus licheniformis DSM 13 = ATCC 14580]
GTGATTCACATCGAACAACCGGCATTCTATACCCGTGAATTGCGGTCATGTTTGGAGCAGCGCCACCTTCTGAAAAGCGA
ACTTCCTTTTCGTGAATCCGTCGTTGATTGGCATATCCAAGAAGGCTTGATAAAAACGGAGGAAGGTATTAAAAAAACGA
AGAAAGGCTTTATTTGTTTGAGGTGCGGCCAGCACGAACGCTCATTTTTCGCCCGGTATCCTTGCTATCGGTGCAGTAAA
TGCTGCGTGTACTGCCGATCCTGCGTCATGATGGGCAGGGTGAGCGATTGTACGCCTCTGTTGACTTGGCACATGCATGT
CAGCCATAAATGGGCGCCTGTTCATACGGAGTGGAAAGGCGCGCTTTCAGCAGGTCAGGAGAAAGCGGCCAAATCCATTA
TCAATGCTATACGAAGAAAAGAAGAACTGTTGGTCTGGGCGGTTTGCGGGTCGGGGAAAACAGAACTTCTCTTTCAAGGG
ATCGAATTCGCGCTGAACAACGGCTTGACAGTATGTATCGCTACTCCGAGAACCGATGTCGTACTCGAGCTTGCTCCGCG
GTTTCGCCAAGCCTTTCCAGGGGTGGAAATTGCCGCTTTGTACGGAGGAAGCTCAGACGTTGGGAATCTCTCGCCGCTTA
TCATTTCAACTACCCACCAGCTGCTCCGCTATAAAGAAGCATTTGACGTGATCATCATAGATGAGGTGGATGCTTTTCCG
TATTCTATTGATAACACGCTGCAATACGCTGTTAAAAAATCGGCAAAACGGCAAAGCGCTCACATCTATTTAACTGCCAC
GCCTTCAGCAGATATGAAAAAAAGGGCTGAGAGCGGAAAGCTGGACACCGTCCGTATTCCCGCGAGATTCCACCGCAGCC
CCTTGCCTGAACCTACATTGATTTGGTGCGGAAATTGGAAAAAGAGTTTGAAACGAAGAAAAGTTCCTTTTCGCCTCAAA
AAATGGCTTTTTAAGCACCAAGAACTGCAGCAACCGGTTTTTTTATTCGTTCCCTCTGTCCCTGTTCTTAAATCTGTGGT
CAGTGTGCTGAAAAAGGAAACATTTCGCGCTGAAGGAGTTTATGCCGATGACCCTGACAGAAATGAAAAAGTGAACCGGT
TTAGGGAAAGTAAGCTTGAGGTGCTCGTGACAACAACGATTTTGGAAAGAGGAGTGACCGTCAAAAAAGCGCAGGTTGGA
GTATTGGGGGCAGAGTCGGCGGTTTTTACCGAAAGCGCCCTCGTCCAAATGGCGGGAAGAGCCGGCAGGCATCCCGAGCA
CACAGATGGAGACGTCTGTTTCTTTCATTACGGCAGGACAAAGTCGATGAATGCGGCACGACGTCATATTCAAAACATGA
ATAAAATGTCTAAAAAGGAAATGTTGATTGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(122-269)

Helicase conserved C-terminal domain (Helicase_C)

(323-424)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

56.332

98.707

0.556

Multiple sequence alignment