Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   TRNA_RS40135 Genome accession   NC_006270
Coordinates   3607305..3608039 (-) Length   244 a.a.
NCBI ID   WP_011198352.1    Uniprot ID   A0A415J866
Organism   Bacillus licheniformis DSM 13 = ATCC 14580     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3602305..3613039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TRNA_RS40100 (BL03372) fliW 3602456..3602887 (-) 432 WP_011198351.1 flagellar assembly protein FliW -
  TRNA_RS40105 (BL03371) - 3602909..3603475 (-) 567 WP_009329670.1 DUF6470 family protein -
  TRNA_RS40110 (BL03370) flgL 3603525..3604436 (-) 912 WP_003185705.1 flagellar hook-associated protein FlgL -
  TRNA_RS40115 (BL03369) flgK 3604447..3605970 (-) 1524 WP_003185709.1 flagellar hook-associated protein FlgK -
  TRNA_RS40120 (BL03368) - 3605986..3606462 (-) 477 WP_003185711.1 flagellar protein FlgN -
  TRNA_RS40125 (BL03367) flgM 3606481..3606747 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  TRNA_RS40130 (BL03366) - 3606827..3607246 (-) 420 WP_003185715.1 TIGR03826 family flagellar region protein -
  TRNA_RS40135 (BL03365) comFC 3607305..3608039 (-) 735 WP_011198352.1 amidophosphoribosyltransferase Machinery gene
  TRNA_RS40140 (BL03364) - 3607996..3608280 (-) 285 WP_003185718.1 late competence development ComFB family protein -
  TRNA_RS40145 (BL03363) comFA 3608335..3609729 (-) 1395 WP_003185720.1 DEAD/DEAH box helicase Machinery gene
  TRNA_RS40150 (BL03362) - 3609850..3610692 (-) 843 WP_003185726.1 DegV family protein -
  TRNA_RS40155 (BL03361) degU 3610812..3611501 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  TRNA_RS40160 (BL03360) degS 3611583..3612740 (-) 1158 WP_003185733.1 sensor histidine kinase Regulator

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27811.22 Da        Isoelectric Point: 9.4827

>NTDB_id=23598 TRNA_RS40135 WP_011198352.1 3607305..3608039(-) (comFC) [Bacillus licheniformis DSM 13 = ATCC 14580]
MKTRFAQAIEEGGNKLNCLICAAPLLHSLSWHSFFFLRSEEKICRECKENFIEIKGTVCPKCGRPQGSEELCGDCAKWEA
NPLTRSLLRQNRSVYLYNTFMKEVLARFKFRGDAELVFAFAPSFISAFQQYFRRSPSVLVPIPLSEERKAERGFNQAERL
ASLLQIPVIHPLIRIENEKQSKKSRKERIKPKTVFRTEKGSVKNLDVILIDDLYTTGATLHHAADCLMTSGEAKSVSSYT
LIRS

Nucleotide


Download         Length: 735 bp        

>NTDB_id=23598 TRNA_RS40135 WP_011198352.1 3607305..3608039(-) (comFC) [Bacillus licheniformis DSM 13 = ATCC 14580]
ATGAAAACCCGCTTTGCGCAAGCAATCGAAGAGGGAGGGAATAAACTGAATTGTTTAATTTGTGCAGCGCCTCTTTTACA
TTCTCTCTCATGGCATTCTTTTTTCTTTTTACGATCAGAAGAGAAAATATGCAGGGAATGTAAAGAGAACTTTATCGAGA
TCAAAGGAACCGTATGCCCTAAGTGCGGACGGCCACAGGGGAGCGAAGAGCTGTGCGGTGACTGCGCAAAATGGGAGGCC
AATCCGTTAACCCGCTCTCTTTTGAGGCAAAACCGCTCTGTTTATCTCTACAATACTTTCATGAAAGAAGTCCTTGCCCG
TTTTAAGTTCAGAGGTGATGCTGAACTGGTCTTCGCTTTTGCCCCTTCATTTATCAGCGCTTTTCAACAATACTTCCGCC
GCAGCCCGTCTGTTTTAGTTCCGATACCTCTCAGTGAAGAACGTAAAGCGGAGAGGGGATTTAATCAGGCGGAGCGTCTT
GCTTCCTTATTACAAATACCCGTTATTCATCCCTTGATCAGAATCGAAAATGAAAAACAATCCAAAAAAAGCAGGAAAGA
GCGAATTAAGCCAAAAACCGTTTTTAGAACCGAAAAGGGGTCAGTAAAGAATCTGGATGTCATATTGATTGACGACTTGT
ATACGACAGGAGCGACCCTTCATCATGCCGCTGATTGCCTGATGACATCCGGAGAAGCAAAATCTGTATCATCATATACA
TTAATTAGAAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(151-242)

Double zinc ribbon domain (DZR_2)

(17-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A415J866

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

52.321

97.131

0.508

Multiple sequence alignment