Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CEP47_RS06055 | Genome accession | NZ_CP022013 |
| Coordinates | 1297300..1297842 (+) | Length | 180 a.a. |
| NCBI ID | WP_261920474.1 | Uniprot ID | A0A8E3SA73 |
| Organism | Mergibacter septicus strain 27517-4-I1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1292300..1302842
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CEP47_RS06040 (CEP47_05980) | - | 1292388..1293053 (-) | 666 | WP_261920477.1 | methionine ABC transporter permease | - |
| CEP47_RS06045 (CEP47_05985) | metN | 1293046..1294080 (-) | 1035 | WP_261920476.1 | methionine ABC transporter ATP-binding protein MetN | - |
| CEP47_RS06050 (CEP47_05990) | uvrA | 1294312..1297149 (-) | 2838 | WP_261920475.1 | excinuclease ABC subunit UvrA | - |
| CEP47_RS06055 (CEP47_05995) | ssb | 1297300..1297842 (+) | 543 | WP_261920474.1 | single-stranded DNA-binding protein | Machinery gene |
| CEP47_RS06060 (CEP47_06000) | - | 1298150..1299448 (-) | 1299 | WP_261920473.1 | ATP-binding protein | - |
| CEP47_RS06065 (CEP47_06005) | thiM | 1299788..1300609 (+) | 822 | WP_261920472.1 | hydroxyethylthiazole kinase | - |
| CEP47_RS06070 (CEP47_06010) | thiE | 1300596..1301240 (+) | 645 | WP_261920471.1 | thiamine phosphate synthase | - |
| CEP47_RS06075 (CEP47_06015) | thiD | 1301242..1302030 (+) | 789 | WP_261920470.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| CEP47_RS06080 (CEP47_06020) | grxD | 1302244..1302585 (-) | 342 | WP_261920469.1 | Grx4 family monothiol glutaredoxin | - |
Sequence
Protein
Download Length: 180 a.a. Molecular weight: 20518.78 Da Isoelectric Point: 5.2802
>NTDB_id=235888 CEP47_RS06055 WP_261920474.1 1297300..1297842(+) (ssb) [Mergibacter septicus strain 27517-4-I1]
MAGVNKVIIVGNLGNDPELRTFPNGDAVANISVATSERWQDKQTGEWREVTEWHRIVLFRRLAEIAGEYLRKGSKVYVEG
KLRTRKWQDQNGQDRYSTEIQADNLQMLDSRADRQQSGGYMPNQTMAPTPKTQNYMPQQQSYAAPQPNHIAPQQNYSQPT
QQPAPVSPEPPMDFDDDIPF
MAGVNKVIIVGNLGNDPELRTFPNGDAVANISVATSERWQDKQTGEWREVTEWHRIVLFRRLAEIAGEYLRKGSKVYVEG
KLRTRKWQDQNGQDRYSTEIQADNLQMLDSRADRQQSGGYMPNQTMAPTPKTQNYMPQQQSYAAPQPNHIAPQQNYSQPT
QQPAPVSPEPPMDFDDDIPF
Nucleotide
Download Length: 543 bp
>NTDB_id=235888 CEP47_RS06055 WP_261920474.1 1297300..1297842(+) (ssb) [Mergibacter septicus strain 27517-4-I1]
ATGGCAGGTGTGAATAAAGTAATTATTGTCGGAAATTTGGGAAATGATCCTGAATTACGCACATTCCCAAATGGTGATGC
AGTAGCAAATATTAGCGTTGCAACGAGTGAACGTTGGCAAGATAAACAAACAGGTGAATGGCGAGAAGTCACAGAATGGC
ATCGTATCGTATTATTCCGTCGTCTTGCTGAAATTGCTGGTGAATATCTACGCAAAGGTTCAAAAGTTTATGTTGAAGGG
AAACTCAGAACCCGCAAATGGCAAGATCAAAATGGTCAAGATCGATATAGCACAGAAATTCAGGCAGATAACTTACAAAT
GCTTGACAGCCGTGCTGATCGTCAACAATCGGGTGGTTATATGCCTAATCAAACAATGGCACCAACACCAAAAACGCAAA
ATTATATGCCACAACAACAAAGTTACGCTGCCCCTCAGCCAAACCATATTGCTCCACAGCAAAATTACAGCCAACCAACA
CAACAACCTGCACCAGTATCACCAGAACCCCCAATGGATTTTGATGATGATATTCCGTTTTAA
ATGGCAGGTGTGAATAAAGTAATTATTGTCGGAAATTTGGGAAATGATCCTGAATTACGCACATTCCCAAATGGTGATGC
AGTAGCAAATATTAGCGTTGCAACGAGTGAACGTTGGCAAGATAAACAAACAGGTGAATGGCGAGAAGTCACAGAATGGC
ATCGTATCGTATTATTCCGTCGTCTTGCTGAAATTGCTGGTGAATATCTACGCAAAGGTTCAAAAGTTTATGTTGAAGGG
AAACTCAGAACCCGCAAATGGCAAGATCAAAATGGTCAAGATCGATATAGCACAGAAATTCAGGCAGATAACTTACAAAT
GCTTGACAGCCGTGCTGATCGTCAACAATCGGGTGGTTATATGCCTAATCAAACAATGGCACCAACACCAAAAACGCAAA
ATTATATGCCACAACAACAAAGTTACGCTGCCCCTCAGCCAAACCATATTGCTCCACAGCAAAATTACAGCCAACCAACA
CAACAACCTGCACCAGTATCACCAGAACCCCCAATGGATTTTGATGATGATATTCCGTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
65.385 |
100 |
0.661 |
| ssb | Vibrio cholerae strain A1552 |
57.377 |
100 |
0.583 |
| ssb | Neisseria gonorrhoeae MS11 |
43.316 |
100 |
0.45 |
| ssb | Neisseria meningitidis MC58 |
44.199 |
100 |
0.444 |