Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CEP49_RS03885 | Genome accession | NZ_CP022012 |
| Coordinates | 892935..893477 (+) | Length | 180 a.a. |
| NCBI ID | WP_265475023.1 | Uniprot ID | - |
| Organism | Mergibacter septicus strain 16309-1-I1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 887935..898477
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CEP49_RS03870 (CEP49_03860) | - | 888034..888699 (-) | 666 | WP_265475020.1 | methionine ABC transporter permease | - |
| CEP49_RS03875 (CEP49_03865) | metN | 888692..889726 (-) | 1035 | WP_265475021.1 | methionine ABC transporter ATP-binding protein MetN | - |
| CEP49_RS03880 (CEP49_03870) | uvrA | 889947..892784 (-) | 2838 | WP_265475022.1 | excinuclease ABC subunit UvrA | - |
| CEP49_RS03885 (CEP49_03875) | ssb | 892935..893477 (+) | 543 | WP_265475023.1 | single-stranded DNA-binding protein | Machinery gene |
| CEP49_RS03890 (CEP49_03880) | - | 893783..895081 (-) | 1299 | WP_265475024.1 | ATP-binding protein | - |
| CEP49_RS03895 (CEP49_03885) | thiM | 895422..896243 (+) | 822 | WP_265475025.1 | hydroxyethylthiazole kinase | - |
| CEP49_RS03900 (CEP49_03890) | thiE | 896230..896874 (+) | 645 | WP_265475026.1 | thiamine phosphate synthase | - |
| CEP49_RS03905 (CEP49_03895) | thiD | 896876..897664 (+) | 789 | WP_265475027.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| CEP49_RS03910 (CEP49_03900) | grxD | 897879..898220 (-) | 342 | WP_265475028.1 | Grx4 family monothiol glutaredoxin | - |
Sequence
Protein
Download Length: 180 a.a. Molecular weight: 20469.73 Da Isoelectric Point: 5.2802
>NTDB_id=235865 CEP49_RS03885 WP_265475023.1 892935..893477(+) (ssb) [Mergibacter septicus strain 16309-1-I1]
MAGVNKVIIVGNLGNDPELRTFPNGDAVANISVATSERWQDKQTGEWREITEWHRIVLYRRLAEIAGEYLRKGSKVYVEG
KLRTRKWQDQNGQDRYSTEIQADNLQMLDSRTDRQQSGGYMPNQAIAPTPKTQNYMPQQQSYAAPQPNHIAPQQNYSQPA
PQPAPVSPEPPMDFDDDIPF
MAGVNKVIIVGNLGNDPELRTFPNGDAVANISVATSERWQDKQTGEWREITEWHRIVLYRRLAEIAGEYLRKGSKVYVEG
KLRTRKWQDQNGQDRYSTEIQADNLQMLDSRTDRQQSGGYMPNQAIAPTPKTQNYMPQQQSYAAPQPNHIAPQQNYSQPA
PQPAPVSPEPPMDFDDDIPF
Nucleotide
Download Length: 543 bp
>NTDB_id=235865 CEP49_RS03885 WP_265475023.1 892935..893477(+) (ssb) [Mergibacter septicus strain 16309-1-I1]
ATGGCAGGTGTGAATAAAGTAATTATTGTCGGAAATTTAGGAAATGATCCTGAATTACGCACATTCCCAAATGGCGATGC
AGTAGCAAATATTAGCGTTGCAACGAGTGAACGTTGGCAAGATAAACAAACAGGTGAATGGCGAGAAATCACAGAATGGC
ATCGTATCGTATTATACCGTCGTCTTGCTGAAATTGCTGGTGAATATCTACGCAAAGGTTCAAAAGTTTATGTTGAAGGG
AAACTCAGAACCCGCAAATGGCAAGATCAAAATGGTCAAGATCGATATAGCACAGAAATTCAGGCAGATAACTTACAAAT
GCTTGACAGCCGTACTGATCGTCAACAATCGGGCGGTTATATGCCTAATCAAGCAATAGCACCAACACCAAAAACGCAAA
ATTATATGCCACAACAACAAAGTTACGCTGCCCCTCAGCCAAACCATATTGCTCCACAGCAAAATTACAGCCAACCAGCA
CCACAACCTGCACCAGTATCACCAGAACCCCCAATGGATTTTGATGATGATATTCCGTTTTAA
ATGGCAGGTGTGAATAAAGTAATTATTGTCGGAAATTTAGGAAATGATCCTGAATTACGCACATTCCCAAATGGCGATGC
AGTAGCAAATATTAGCGTTGCAACGAGTGAACGTTGGCAAGATAAACAAACAGGTGAATGGCGAGAAATCACAGAATGGC
ATCGTATCGTATTATACCGTCGTCTTGCTGAAATTGCTGGTGAATATCTACGCAAAGGTTCAAAAGTTTATGTTGAAGGG
AAACTCAGAACCCGCAAATGGCAAGATCAAAATGGTCAAGATCGATATAGCACAGAAATTCAGGCAGATAACTTACAAAT
GCTTGACAGCCGTACTGATCGTCAACAATCGGGCGGTTATATGCCTAATCAAGCAATAGCACCAACACCAAAAACGCAAA
ATTATATGCCACAACAACAAAGTTACGCTGCCCCTCAGCCAAACCATATTGCTCCACAGCAAAATTACAGCCAACCAGCA
CCACAACCTGCACCAGTATCACCAGAACCCCCAATGGATTTTGATGATGATATTCCGTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
65.241 |
100 |
0.678 |
| ssb | Vibrio cholerae strain A1552 |
57.377 |
100 |
0.583 |
| ssb | Neisseria meningitidis MC58 |
44.751 |
100 |
0.45 |
| ssb | Neisseria gonorrhoeae MS11 |
44.751 |
100 |
0.45 |