Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   XM38_RS05420 Genome accession   NZ_CP021983
Coordinates   1174106..1174477 (-) Length   123 a.a.
NCBI ID   WP_080806180.1    Uniprot ID   A0A1Z3HIS3
Organism   Halomicronema hongdechloris C2206     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1169106..1179477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XM38_RS05405 (XM38_011240) - 1171003..1171794 (+) 792 WP_187329291.1 PAS domain-containing protein -
  XM38_RS28655 - 1171861..1172921 (+) 1061 WP_088431532.1 IS630 family transposase -
  XM38_RS26790 (XM38_011270) - 1172938..1174134 (+) 1197 WP_225889442.1 bifunctional diguanylate cyclase/phosphodiesterase -
  XM38_RS05420 (XM38_011280) pilH 1174106..1174477 (-) 372 WP_080806180.1 response regulator transcription factor Machinery gene
  XM38_RS05425 (XM38_011290) - 1174526..1175761 (-) 1236 Protein_1100 DUF790 family protein -
  XM38_RS05430 (XM38_011300) panB 1175791..1176573 (-) 783 WP_080806177.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  XM38_RS05435 (XM38_011310) - 1176651..1177730 (-) 1080 WP_080806172.1 two-component regulator propeller domain-containing protein -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13893.20 Da        Isoelectric Point: 5.8765

>NTDB_id=235606 XM38_RS05420 WP_080806180.1 1174106..1174477(-) (pilH) [Halomicronema hongdechloris C2206]
MSTILIVDDSSTLREMIAGLLIKLGMTVTEAKDGVEAQQILQTNPPDLMVLDIIMPNMNGYELCRWAKNNPSTKDIPIVI
CSSKGEEFDRHWGMKQGADAYIAKPFRPSEMVETVKQLLRQRR

Nucleotide


Download         Length: 372 bp        

>NTDB_id=235606 XM38_RS05420 WP_080806180.1 1174106..1174477(-) (pilH) [Halomicronema hongdechloris C2206]
ATGAGCACGATCTTGATCGTAGATGACAGTTCCACCCTGCGGGAGATGATCGCTGGCCTCCTAATCAAGCTAGGAATGAC
CGTGACCGAAGCCAAAGATGGCGTCGAAGCCCAACAAATACTGCAAACCAACCCTCCAGATCTGATGGTGCTCGACATCA
TCATGCCCAATATGAACGGCTATGAACTCTGCCGCTGGGCCAAGAATAATCCCAGCACCAAAGACATCCCCATTGTCATC
TGTAGCTCCAAGGGCGAAGAATTTGATCGCCATTGGGGCATGAAACAAGGGGCCGACGCCTACATCGCTAAACCCTTTCG
TCCCAGTGAAATGGTGGAAACCGTTAAGCAACTGCTGCGTCAGCGGCGATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Z3HIS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

64.167

97.561

0.626
  micA Streptococcus pneumoniae Cp1015

38.017

98.374

0.374
  vicR Streptococcus mutans UA159

37.19

98.374

0.366
  chpA Acinetobacter baumannii strain A118

38.793

94.309

0.366

Multiple sequence alignment