Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   SE071780_RS07540 Genome accession   NZ_CP021972
Coordinates   1553525..1554247 (-) Length   240 a.a.
NCBI ID   WP_012677660.1    Uniprot ID   A0AAW3GL08
Organism   Streptococcus equi subsp. equi strain ATCC 39506     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1548525..1559247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE071780_RS07515 (SE071780_01573) pstB 1548690..1549442 (-) 753 WP_012679823.1 phosphate ABC transporter ATP-binding protein PstB -
  SE071780_RS07520 (SE071780_01574) pstA 1549444..1550259 (-) 816 WP_012679824.1 phosphate ABC transporter permease PstA -
  SE071780_RS07525 (SE071780_01575) pstC 1550252..1551115 (-) 864 WP_012679825.1 phosphate ABC transporter permease subunit PstC -
  SE071780_RS07530 (SE071780_01576) - 1551185..1552057 (-) 873 WP_042357068.1 substrate-binding domain-containing protein -
  SE071780_RS07535 (SE071780_01577) pnpS 1552216..1553541 (-) 1326 WP_012679827.1 two-component system histidine kinase PnpS -
  SE071780_RS07540 (SE071780_01578) vicR 1553525..1554247 (-) 723 WP_012677660.1 response regulator transcription factor Regulator
  SE071780_RS07545 (SE071780_01579) - 1554419..1554574 (+) 156 WP_012515968.1 SPJ_0845 family protein -
  SE071780_RS07550 (SE071780_01580) - 1554615..1555517 (+) 903 WP_012677658.1 permease -
  SE071780_RS07555 (SE071780_01581) - 1555517..1556332 (+) 816 WP_042357070.1 TIGR03943 family protein -
  SE071780_RS07560 (SE071780_01582) - 1556517..1557938 (-) 1422 WP_012679829.1 glycoside hydrolase family 1 protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 28111.54 Da        Isoelectric Point: 6.1653

>NTDB_id=235434 SE071780_RS07540 WP_012677660.1 1553525..1554247(-) (vicR) [Streptococcus equi subsp. equi strain ATCC 39506]
MTKRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGIEVCKRLRAKGSKTPIMMV
SAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEAEISGDGEERREPFYTMSQLRLYPERHEVYKDKELLPL
TPKEYELLLYLMKHPNMTLTRERLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKFKELKNDRTS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=235434 SE071780_RS07540 WP_012677660.1 1553525..1554247(-) (vicR) [Streptococcus equi subsp. equi strain ATCC 39506]
ATGACAAAACGAGTATTATTAGTAGATGATGAGGAGCCTATCTTAAGGCTACTGGATTATCACTTGGCCAAGGAGGGCTT
TGTGACAGAGATGGTAACAGATGGCCGTACTGCCTTGGCATTAGCTGAAAGAGAACCTTATGATTTTATTGTGTTAGATA
TTATGCTGCCGCAATTAGACGGTATCGAGGTCTGCAAAAGGCTTCGTGCTAAGGGAAGCAAAACCCCAATTATGATGGTT
TCTGCTAAAAGTGATGAATTTGACAAGGTTTTGGCTTTGGAGCTGGGGGCAGATGATTATGTGACCAAGCCCTTTAGTCC
TAGAGAATTATTAGCGCGTGTCAAGGCTATTTTAAGGCGTACTGAAGCAGAGATTTCTGGTGATGGTGAAGAGCGTCGTG
AGCCTTTTTATACGATGAGTCAATTGCGTCTGTACCCAGAGCGACATGAGGTCTATAAGGACAAGGAGCTATTGCCGTTA
ACCCCAAAGGAATATGAGCTACTGCTCTATCTCATGAAGCACCCTAATATGACCCTGACGCGTGAGCGGCTATTAGAGCG
TATCTGGGGTTATGACTTTGGCCAAGAAACACGTCTGGTAGACGTTCATATTGGCAAGCTCAGAGAAAAAATCGAGGACA
ATCCTAAGGCGCCTCAGTATATTCAAACCATTCGCGGCTATGGCTACAAATTTAAGGAGCTAAAGAATGATAGGACATCT
TAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(158-231)

Response regulator receiver domain (Response_reg)

(5-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

52.155

96.667

0.504
  micA Streptococcus pneumoniae Cp1015

50

95.833

0.479
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.017

97.5

0.429
  covR Streptococcus salivarius strain HSISS4

40.773

97.083

0.396

Multiple sequence alignment