Detailed information NTG0235416

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: SE071780_RS02065
• Genome accession: NZ_CP021972
• Coordinates: 384620..385108 (+)
• Length: 162 a.a.
• NCBI ID: WP_012679031.1
• Uniprot ID: C0MB80
• Organism: Streptococcus equi subsp. equi strain ATCC 39506
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	385712..387054	384620..385108	flank	604

Gene organization within MGE regions

Location: 384620..387054

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SE071780_RS02065 (SE071780_00427)	ssbA	384620..385108 (+)	489	WP_012679031.1	single-stranded DNA-binding protein	Machinery gene
SE071780_RS02070 (SE071780_00428)	rpsR	385267..385506 (+)	240	WP_002983142.1	30S ribosomal protein S18	-
SE071780_RS02075	-	385712..387054 (+)	1343	WP_165626751.1	IS3 family transposase	-

Sequence

Protein

• Length: 162 a.a.
• Molecular weight: 17750.59 Da
• Isoelectric Point: 5.1951

>NTDB_id=235416 SE071780_RS02065 WP_012679031.1 384620..385108(+) (ssbA) [Streptococcus equi subsp. equi strain ATCC 39506]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRAFKSQNGEREADFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREANSSGSYGGGFNSSPATNSYSAPAQQTPNFGRDGSPFGGSNPMDISDDDL
PF

Nucleotide

• Length: 489 bp

>NTDB_id=235416 SE071780_RS02065 WP_012679031.1 384620..385108(+) (ssbA) [Streptococcus equi subsp. equi strain ATCC 39506]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGACGCAGAGCTTCGATACACTCCAAGTCAGGTGGCAGTTGC
TACGTTTACACTTGCTGTTAATCGCGCCTTTAAGAGCCAAAATGGTGAGCGCGAAGCGGATTTCATTAACTGTGTGATCT
GGCGTCAGCAAGCTGAAAATTTAGCTAACTGGGCTAAAAAGGGTGCCTTGATTGGGATTACGGGACGTATTCAGACTCGT
AACTACGAAAACCAACAGGGGCAGCGTGTGTATGTAACCGAGGTTGTTGCAGATAATTTCCAAATGCTGGAAAGTCGTGC
TACACGTGAGGCGAACTCGTCTGGCTCATATGGTGGTGGTTTTAATAGCTCACCGGCAACCAATAGCTATTCAGCGCCTG
CTCAGCAAACACCTAACTTTGGCAGAGATGGAAGTCCATTTGGCGGCTCAAATCCAATGGATATTTCAGATGACGATCTT
CCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

3D structure

• AlphaFold DB: C0MB80

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	58.046	100	0.623
ssb	Latilactobacillus sakei subsp. sakei 23K	57.895	100	0.611
ssbB	Bacillus subtilis subsp. subtilis str. 168	54.955	68.519	0.377