Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | S100194_RS08940 | Genome accession | NZ_CP021927 |
| Coordinates | 1747719..1748246 (-) | Length | 175 a.a. |
| NCBI ID | WP_002833866.1 | Uniprot ID | A0A0R2H8I2 |
| Organism | Pediococcus pentosaceus strain SRCM100194 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1742719..1753246
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| S100194_RS08920 (S100194_01809) | dnaB | 1743352..1744749 (-) | 1398 | WP_002833870.1 | replicative DNA helicase | - |
| S100194_RS08925 (S100194_01810) | rplI | 1744798..1745250 (-) | 453 | WP_023439730.1 | 50S ribosomal protein L9 | - |
| S100194_RS08930 (S100194_01811) | - | 1745256..1747256 (-) | 2001 | WP_002833868.1 | DHH family phosphoesterase | - |
| S100194_RS08935 (S100194_01812) | rpsR | 1747459..1747695 (-) | 237 | WP_002833867.1 | 30S ribosomal protein S18 | - |
| S100194_RS08940 (S100194_01813) | ssb | 1747719..1748246 (-) | 528 | WP_002833866.1 | single-stranded DNA-binding protein | Machinery gene |
| S100194_RS08945 (S100194_01814) | rpsF | 1748282..1748566 (-) | 285 | WP_002833865.1 | 30S ribosomal protein S6 | - |
| S100194_RS08950 (S100194_01815) | gyrA | 1748813..1751293 (-) | 2481 | WP_269668170.1 | DNA gyrase subunit A | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 19144.68 Da Isoelectric Point: 4.7512
>NTDB_id=235032 S100194_RS08940 WP_002833866.1 1747719..1748246(-) (ssb) [Pediococcus pentosaceus strain SRCM100194]
MINRTVLVGRLTRDPELRYTGSGAAVVTFTVAVNRQFTNSQGEREADFINCVMWRKAAENFANFTRKGSLVGIDGRIQTR
SYENQQGQRVYVTEVVAENFSLLESRSSSERRQGGENNFGNNQSAPSQQPTSSGNPFDGGQSNNSGAQQPNNSNPNDPFA
NGGQSIDISDDDLPF
MINRTVLVGRLTRDPELRYTGSGAAVVTFTVAVNRQFTNSQGEREADFINCVMWRKAAENFANFTRKGSLVGIDGRIQTR
SYENQQGQRVYVTEVVAENFSLLESRSSSERRQGGENNFGNNQSAPSQQPTSSGNPFDGGQSNNSGAQQPNNSNPNDPFA
NGGQSIDISDDDLPF
Nucleotide
Download Length: 528 bp
>NTDB_id=235032 S100194_RS08940 WP_002833866.1 1747719..1748246(-) (ssb) [Pediococcus pentosaceus strain SRCM100194]
ATGATTAACCGAACAGTGCTTGTCGGACGCCTAACAAGGGACCCTGAACTACGATATACAGGTAGTGGAGCTGCAGTAGT
AACTTTTACAGTTGCTGTTAATCGTCAGTTTACTAATTCACAAGGTGAACGCGAAGCTGACTTTATTAATTGTGTTATGT
GGCGTAAAGCTGCAGAAAACTTTGCTAACTTCACTCGGAAGGGTTCATTAGTTGGTATCGACGGACGGATTCAAACCCGT
TCTTATGAAAACCAACAAGGCCAACGAGTTTATGTTACCGAGGTTGTAGCCGAAAACTTCTCTCTTCTTGAATCACGTTC
ATCTTCTGAACGTCGTCAAGGTGGAGAAAATAATTTTGGCAATAATCAATCTGCCCCTTCACAACAACCAACATCATCCG
GAAATCCATTTGACGGAGGACAATCGAATAATAGTGGTGCACAACAACCTAACAATTCGAACCCTAATGACCCATTTGCT
AATGGCGGTCAGTCAATTGATATTTCTGACGATGATTTACCATTCTAA
ATGATTAACCGAACAGTGCTTGTCGGACGCCTAACAAGGGACCCTGAACTACGATATACAGGTAGTGGAGCTGCAGTAGT
AACTTTTACAGTTGCTGTTAATCGTCAGTTTACTAATTCACAAGGTGAACGCGAAGCTGACTTTATTAATTGTGTTATGT
GGCGTAAAGCTGCAGAAAACTTTGCTAACTTCACTCGGAAGGGTTCATTAGTTGGTATCGACGGACGGATTCAAACCCGT
TCTTATGAAAACCAACAAGGCCAACGAGTTTATGTTACCGAGGTTGTAGCCGAAAACTTCTCTCTTCTTGAATCACGTTC
ATCTTCTGAACGTCGTCAAGGTGGAGAAAATAATTTTGGCAATAATCAATCTGCCCCTTCACAACAACCAACATCATCCG
GAAATCCATTTGACGGAGGACAATCGAATAATAGTGGTGCACAACAACCTAACAATTCGAACCCTAATGACCCATTTGCT
AATGGCGGTCAGTCAATTGATATTTCTGACGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
67.582 |
100 |
0.703 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
62.286 |
100 |
0.623 |
| ssb | Glaesserella parasuis strain SC1401 |
33.871 |
100 |
0.36 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
60.571 |
0.36 |