Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   S101468_RS07420 Genome accession   NZ_CP021922
Coordinates   1490041..1490601 (-) Length   186 a.a.
NCBI ID   WP_088364807.1    Uniprot ID   A0AAC9SNR4
Organism   Acetobacter pasteurianus subsp. pasteurianus strain SRCM101468     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1485041..1495601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101468_RS07390 (S101468_01496) - 1485295..1485873 (+) 579 WP_014457577.1 recombinase family protein -
  S101468_RS07395 (S101468_01497) - 1485867..1486490 (+) 624 WP_014457576.1 hypothetical protein -
  S101468_RS16675 (S101468_01498) - 1486575..1487375 (-) 801 WP_250698422.1 site-specific integrase -
  S101468_RS16680 - 1487302..1487835 (-) 534 WP_173328354.1 hypothetical protein -
  S101468_RS07410 (S101468_01500) dksA 1488077..1488490 (-) 414 WP_003626519.1 RNA polymerase-binding protein DksA -
  S101468_RS07415 (S101468_01502) - 1488706..1489979 (-) 1274 Protein_1440 O-antigen ligase family protein -
  S101468_RS07420 (S101468_01503) ssb 1490041..1490601 (-) 561 WP_088364807.1 single-stranded DNA-binding protein Machinery gene
  S101468_RS07425 (S101468_01504) rsmD 1490681..1491265 (-) 585 WP_003626513.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  S101468_RS07430 (S101468_01505) - 1491265..1492041 (-) 777 WP_014457574.1 pseudouridine synthase -
  S101468_RS07435 (S101468_01506) - 1492038..1492769 (-) 732 WP_003626508.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  S101468_RS16685 (S101468_01507) - 1492894..1493046 (-) 153 WP_003626506.1 hypothetical protein -
  S101468_RS07440 (S101468_01508) - 1493267..1493722 (+) 456 WP_014457572.1 nucleoside deaminase -
  S101468_RS07445 - 1493898..1495464 (+) 1567 Protein_1447 Do family serine endopeptidase -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 19826.44 Da        Isoelectric Point: 5.3755

>NTDB_id=235008 S101468_RS07420 WP_088364807.1 1490041..1490601(-) (ssb) [Acetobacter pasteurianus subsp. pasteurianus strain SRCM101468]
MAGSVNKVILVGNLGKDPEVRSSQSGAKIVSFSLATSDTWNDRASGERRERTEWHRVVIFNERLADVAERFLRKGRKVYL
EGSLQTRKWTDQGGQERYTTEVTIDRFRGELVLLDSRNSSEGEGEGGGFGGGSGSSYGGYNSGGGGGYGAPSSAPRQQPA
QRSGGNNSGGWDASGGNGDLDDEIPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=235008 S101468_RS07420 WP_088364807.1 1490041..1490601(-) (ssb) [Acetobacter pasteurianus subsp. pasteurianus strain SRCM101468]
ATGGCTGGCAGCGTTAACAAGGTTATTCTGGTCGGCAATCTGGGCAAGGACCCCGAAGTGCGTTCCAGCCAGAGCGGTGC
AAAGATTGTTTCCTTCTCTCTGGCCACCAGCGACACATGGAATGACCGCGCATCTGGTGAACGACGTGAACGCACAGAAT
GGCATCGCGTGGTTATTTTCAACGAACGTCTGGCAGATGTGGCCGAACGCTTCTTGCGCAAAGGCCGCAAGGTTTATCTG
GAAGGCTCCCTGCAGACCAGAAAATGGACAGATCAGGGTGGGCAGGAACGCTACACGACGGAAGTGACTATCGACCGTTT
CCGTGGTGAACTGGTGCTGCTGGATAGCCGCAATAGTAGCGAAGGCGAAGGTGAAGGCGGCGGCTTTGGTGGCGGAAGCG
GCAGCAGCTACGGCGGCTATAACAGTGGTGGCGGCGGTGGTTATGGCGCCCCATCATCCGCACCACGCCAGCAACCAGCA
CAGCGCAGCGGTGGCAATAACTCCGGCGGCTGGGATGCATCTGGCGGCAACGGAGATCTTGATGACGAAATTCCGTTCTA
A

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.475

100

0.505
  ssb Vibrio cholerae strain A1552

44.565

98.925

0.441
  ssb Neisseria meningitidis MC58

38.798

98.387

0.382
  ssb Neisseria gonorrhoeae MS11

38.251

98.387

0.376

Multiple sequence alignment