Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CDO87_RS19810 Genome accession   NZ_CP021913
Coordinates   4108225..4108755 (-) Length   176 a.a.
NCBI ID   WP_100930378.1    Uniprot ID   -
Organism   Sagittula sp. P11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4103225..4113755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDO87_RS19785 (CDO87_19775) ppk2 4103688..4104563 (-) 876 WP_100930374.1 polyphosphate kinase 2 -
  CDO87_RS19790 (CDO87_19780) - 4104691..4105512 (+) 822 WP_254698217.1 L,D-transpeptidase -
  CDO87_RS19795 (CDO87_19785) - 4105515..4106483 (-) 969 WP_100930375.1 alpha/beta fold hydrolase -
  CDO87_RS19800 (CDO87_19790) metA 4106503..4107423 (-) 921 WP_100930376.1 homoserine O-succinyltransferase -
  CDO87_RS19805 (CDO87_19795) - 4107550..4108140 (+) 591 WP_157815057.1 hypothetical protein -
  CDO87_RS19810 (CDO87_19800) ssb 4108225..4108755 (-) 531 WP_100930378.1 single-stranded DNA-binding protein Machinery gene
  CDO87_RS19815 (CDO87_19805) - 4108930..4109544 (+) 615 WP_198521767.1 lytic transglycosylase domain-containing protein -
  CDO87_RS19820 (CDO87_19810) - 4109647..4110660 (+) 1014 WP_100930379.1 hypothetical protein -
  CDO87_RS19825 (CDO87_19815) - 4110831..4112918 (-) 2088 WP_100930380.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18881.50 Da        Isoelectric Point: 5.3738

>NTDB_id=234858 CDO87_RS19810 WP_100930378.1 4108225..4108755(-) (ssb) [Sagittula sp. P11]
MAGSVNKVILVGNLGRDPEVRTFQNGGKVCNLRIATSENWKDRNTGERRERTEWHSVAIFSEPLARIAEQYLRKGSKVYI
EGQLETRKWQDQSGQDRYSTEVVLRPYRGELTLLDGRSDGGSGGGGAGSFGGGGDSYGGGGYDDRGYDDRGGSGSAGGGS
GPSRAPSRDLDDEIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=234858 CDO87_RS19810 WP_100930378.1 4108225..4108755(-) (ssb) [Sagittula sp. P11]
ATGGCCGGTTCCGTCAACAAGGTGATCCTCGTGGGCAATCTCGGGCGCGACCCGGAAGTGCGTACCTTCCAGAACGGGGG
CAAGGTCTGCAACCTGCGGATCGCCACGTCAGAGAACTGGAAGGACCGCAATACGGGCGAGCGCCGCGAACGCACGGAAT
GGCATTCGGTCGCGATCTTCTCCGAGCCGCTGGCCCGGATCGCCGAGCAATACCTGCGCAAGGGTTCGAAGGTCTACATC
GAGGGCCAGCTTGAAACGCGCAAGTGGCAGGACCAGTCTGGTCAGGACCGCTATTCGACCGAGGTCGTGCTGCGCCCCTA
CCGTGGCGAGCTGACCCTGCTCGACGGCCGCAGCGATGGCGGCAGCGGTGGTGGTGGCGCCGGCTCGTTCGGCGGCGGTG
GCGACAGCTACGGTGGCGGCGGCTACGACGACCGCGGTTACGACGACCGCGGCGGCAGTGGCAGCGCCGGTGGCGGTTCC
GGCCCCTCCCGCGCGCCGTCCCGCGATCTGGACGACGAGATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.198

100

0.523
  ssb Vibrio cholerae strain A1552

50.289

98.295

0.494
  ssb Neisseria meningitidis MC58

41.341

100

0.42
  ssb Neisseria gonorrhoeae MS11

41.341

100

0.42

Multiple sequence alignment