Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CDO84_RS20185 Genome accession   NZ_CP021911
Coordinates   3971406..3971924 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus sp. MD-5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3966406..3976924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDO84_RS20155 (CDO84_20155) - 3966912..3968267 (+) 1356 WP_040081136.1 MFS transporter -
  CDO84_RS20160 (CDO84_20160) - 3968301..3968855 (-) 555 WP_040081134.1 sugar O-acetyltransferase -
  CDO84_RS20165 (CDO84_20165) - 3968873..3969253 (-) 381 WP_014666135.1 VOC family protein -
  CDO84_RS20170 (CDO84_20170) - 3969308..3970243 (-) 936 WP_040081132.1 LacI family DNA-binding transcriptional regulator -
  CDO84_RS20175 (CDO84_20175) xth 3970304..3971062 (-) 759 WP_040081130.1 exodeoxyribonuclease III -
  CDO84_RS20180 (CDO84_20180) rpsR 3971123..3971362 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  CDO84_RS20185 (CDO84_20185) ssbA 3971406..3971924 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  CDO84_RS20190 (CDO84_20190) rpsF 3971965..3972252 (-) 288 WP_014115888.1 30S ribosomal protein S6 -
  CDO84_RS20195 (CDO84_20195) ychF 3972363..3973463 (-) 1101 WP_014666140.1 redox-regulated ATPase YchF -
  CDO84_RS20200 (CDO84_20200) - 3973590..3975593 (-) 2004 WP_040081128.1 molybdopterin-dependent oxidoreductase -
  CDO84_RS20205 (CDO84_20205) - 3975644..3975850 (-) 207 WP_003219236.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=234839 CDO84_RS20185 WP_003219228.1 3971406..3971924(-) (ssbA) [Bacillus sp. MD-5]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=234839 CDO84_RS20185 WP_003219228.1 3971406..3971924(-) (ssbA) [Bacillus sp. MD-5]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTCGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGATGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment