Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   CDO84_RS11370 Genome accession   NZ_CP021911
Coordinates   2284812..2285192 (-) Length   126 a.a.
NCBI ID   WP_040082642.1    Uniprot ID   -
Organism   Bacillus sp. MD-5     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2279812..2290192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDO84_RS11330 (CDO84_11330) sinI 2280751..2280924 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  CDO84_RS11335 (CDO84_11335) sinR 2280958..2281293 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  CDO84_RS11340 (CDO84_11340) tasA 2281387..2282172 (-) 786 WP_014664586.1 biofilm matrix protein TasA -
  CDO84_RS11345 (CDO84_11345) - 2282236..2282808 (-) 573 WP_014664587.1 signal peptidase I -
  CDO84_RS11350 (CDO84_11350) tapA 2282792..2283547 (-) 756 WP_014664588.1 amyloid fiber anchoring/assembly protein TapA -
  CDO84_RS11355 (CDO84_11355) - 2283819..2284145 (+) 327 WP_040082645.1 YqzG/YhdC family protein -
  CDO84_RS11360 (CDO84_11360) - 2284186..2284365 (-) 180 WP_014480252.1 YqzE family protein -
  CDO84_RS11365 (CDO84_11365) comGG 2284437..2284811 (-) 375 WP_040082643.1 competence type IV pilus minor pilin ComGG Machinery gene
  CDO84_RS11370 (CDO84_11370) comGF 2284812..2285192 (-) 381 WP_040082642.1 competence type IV pilus minor pilin ComGF Machinery gene
  CDO84_RS11375 (CDO84_11375) comGE 2285218..2285565 (-) 348 WP_040082640.1 competence type IV pilus minor pilin ComGE Machinery gene
  CDO84_RS11380 (CDO84_11380) comGD 2285549..2285980 (-) 432 WP_040082639.1 competence type IV pilus minor pilin ComGD Machinery gene
  CDO84_RS11385 (CDO84_11385) comGC 2285970..2286266 (-) 297 WP_019258890.1 comG operon protein ComGC Machinery gene
  CDO84_RS11390 (CDO84_11390) comGB 2286280..2287317 (-) 1038 WP_040082638.1 competence type IV pilus assembly protein ComGB Machinery gene
  CDO84_RS11395 (CDO84_11395) comGA 2287304..2288374 (-) 1071 WP_040082636.1 competence protein ComGA Machinery gene
  CDO84_RS21580 (CDO84_11400) - 2288337..2288555 (-) 219 WP_040082635.1 hypothetical protein -
  CDO84_RS11405 (CDO84_11405) - 2288586..2288996 (-) 411 WP_040082633.1 CBS domain-containing protein -
  CDO84_RS11410 (CDO84_11410) corA 2289059..2290012 (-) 954 WP_040082632.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 14216.34 Da        Isoelectric Point: 6.4842

>NTDB_id=234803 CDO84_RS11370 WP_040082642.1 2284812..2285192(-) (comGF) [Bacillus sp. MD-5]
MLISGSLATIFHLFLSRQQDHDGFTQQEWMISIEQMMNECKESQAVKTAEHGSVLICTNLSGQDIRFEVYHSMVRKRVDG
KGHVPILDHITAMKADIENGIVLLKIESEKKVYQTAFPVYSYLGGG

Nucleotide


Download         Length: 381 bp        

>NTDB_id=234803 CDO84_RS11370 WP_040082642.1 2284812..2285192(-) (comGF) [Bacillus sp. MD-5]
TTGCTCATATCAGGATCGTTAGCGACGATTTTCCATTTGTTTTTATCTCGACAGCAGGATCATGACGGTTTTACACAGCA
AGAATGGATGATTTCGATAGAACAGATGATGAATGAATGCAAGGAGTCACAGGCAGTTAAGACAGCCGAGCATGGGAGCG
TTTTAATTTGCACCAATCTTTCCGGGCAAGACATCCGTTTTGAAGTTTATCATTCTATGGTAAGAAAAAGAGTGGATGGC
AAAGGGCATGTTCCCATTTTAGATCATATTACAGCTATGAAAGCTGATATTGAAAATGGTATTGTTTTGCTGAAAATTGA
GAGTGAGAAAAAAGTGTATCAAACTGCTTTTCCGGTTTATTCGTATTTAGGAGGAGGGTGA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(16-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Bacillus subtilis subsp. subtilis str. 168

92.913

100

0.937

Multiple sequence alignment