Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | CDO84_RS11335 | Genome accession | NZ_CP021911 |
| Coordinates | 2280958..2281293 (+) | Length | 111 a.a. |
| NCBI ID | WP_003226345.1 | Uniprot ID | A0AAE2VGU9 |
| Organism | Bacillus sp. MD-5 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2275958..2286293
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDO84_RS11315 (CDO84_11315) | gcvT | 2276547..2277635 (-) | 1089 | WP_040082650.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| CDO84_RS11320 (CDO84_11320) | - | 2278079..2279752 (+) | 1674 | WP_040082648.1 | SNF2-related protein | - |
| CDO84_RS11325 (CDO84_11325) | - | 2279773..2280567 (+) | 795 | WP_014664585.1 | YqhG family protein | - |
| CDO84_RS11330 (CDO84_11330) | sinI | 2280751..2280924 (+) | 174 | WP_003230187.1 | anti-repressor SinI family protein | Regulator |
| CDO84_RS11335 (CDO84_11335) | sinR | 2280958..2281293 (+) | 336 | WP_003226345.1 | transcriptional regulator SinR | Regulator |
| CDO84_RS11340 (CDO84_11340) | tasA | 2281387..2282172 (-) | 786 | WP_014664586.1 | biofilm matrix protein TasA | - |
| CDO84_RS11345 (CDO84_11345) | - | 2282236..2282808 (-) | 573 | WP_014664587.1 | signal peptidase I | - |
| CDO84_RS11350 (CDO84_11350) | tapA | 2282792..2283547 (-) | 756 | WP_014664588.1 | amyloid fiber anchoring/assembly protein TapA | - |
| CDO84_RS11355 (CDO84_11355) | - | 2283819..2284145 (+) | 327 | WP_040082645.1 | YqzG/YhdC family protein | - |
| CDO84_RS11360 (CDO84_11360) | - | 2284186..2284365 (-) | 180 | WP_014480252.1 | YqzE family protein | - |
| CDO84_RS11365 (CDO84_11365) | comGG | 2284437..2284811 (-) | 375 | WP_040082643.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| CDO84_RS11370 (CDO84_11370) | comGF | 2284812..2285192 (-) | 381 | WP_040082642.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| CDO84_RS11375 (CDO84_11375) | comGE | 2285218..2285565 (-) | 348 | WP_040082640.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| CDO84_RS11380 (CDO84_11380) | comGD | 2285549..2285980 (-) | 432 | WP_040082639.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| CDO84_RS11385 (CDO84_11385) | comGC | 2285970..2286266 (-) | 297 | WP_019258890.1 | comG operon protein ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12988.64 Da Isoelectric Point: 7.2023
>NTDB_id=234801 CDO84_RS11335 WP_003226345.1 2280958..2281293(+) (sinR) [Bacillus sp. MD-5]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
Nucleotide
Download Length: 336 bp
>NTDB_id=234801 CDO84_RS11335 WP_003226345.1 2280958..2281293(+) (sinR) [Bacillus sp. MD-5]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCAATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCAATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |