Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | CD017_RS01635 | Genome accession | NZ_CP021905 |
| Coordinates | 359120..359623 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain Seattle 1945 isolate G477 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 355060..378532 | 359120..359623 | within | 0 |
Gene organization within MGE regions
Location: 355060..378532
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CD017_RS01600 | - | 355060..355905 (+) | 846 | WP_001573568.1 | ParB/RepB/Spo0J family partition protein | - |
| CD017_RS01605 | - | 356059..356940 (+) | 882 | WP_000373076.1 | mechanosensitive ion channel family protein | - |
| CD017_RS01610 | - | 356970..357173 (+) | 204 | WP_000157348.1 | DUF951 domain-containing protein | - |
| CD017_RS01615 | ychF | 357185..358282 (+) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| CD017_RS01620 | - | 358368..358559 (-) | 192 | WP_001052483.1 | hypothetical protein | - |
| CD017_RS01630 | rpsF | 358803..359099 (+) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| CD017_RS01635 | ssbA | 359120..359623 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| CD017_RS01640 | rpsR | 359675..359917 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| CD017_RS01645 | - | 360149..360982 (-) | 834 | WP_000370312.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| CD017_RS01650 | - | 360983..362197 (-) | 1215 | WP_000270132.1 | tyrosine-type recombinase/integrase | - |
| CD017_RS01655 | - | 362653..363348 (-) | 696 | WP_000668212.1 | helix-turn-helix domain-containing protein | - |
| CD017_RS01660 | - | 363492..363704 (+) | 213 | WP_000794656.1 | helix-turn-helix domain-containing protein | - |
| CD017_RS01665 | - | 363705..363977 (+) | 273 | WP_000091734.1 | helix-turn-helix domain-containing protein | - |
| CD017_RS01670 | - | 363989..364135 (+) | 147 | WP_031824147.1 | hypothetical protein | - |
| CD017_RS01675 | tscA | 364128..364337 (+) | 210 | WP_001058486.1 | type II toxin-antitoxin system antitoxin TscA | - |
| CD017_RS01680 | tscT | 364340..364663 (+) | 324 | WP_001103945.1 | type II toxin-antitoxin system toxin TscT | - |
| CD017_RS01685 | - | 364728..365597 (+) | 870 | WP_001002723.1 | primase alpha helix C-terminal domain-containing protein | - |
| CD017_RS01690 | - | 365611..367320 (+) | 1710 | WP_000447449.1 | DUF927 domain-containing protein | - |
| CD017_RS01695 | - | 367632..368012 (+) | 381 | WP_000356936.1 | hypothetical protein | - |
| CD017_RS01700 | - | 368009..368650 (+) | 642 | WP_001019780.1 | hypothetical protein | - |
| CD017_RS01705 | - | 369167..369508 (+) | 342 | WP_001190612.1 | hypothetical protein | - |
| CD017_RS01710 | - | 369520..370116 (+) | 597 | WP_038412914.1 | hypothetical protein | - |
| CD017_RS01715 | - | 370117..370335 (+) | 219 | WP_000448775.1 | capsid morphogenesis B protein | - |
| CD017_RS01720 | - | 370386..370913 (+) | 528 | WP_000771380.1 | spore coat protein | - |
| CD017_RS01725 | - | 371045..371257 (+) | 213 | WP_001656917.1 | hypothetical protein | - |
| CD017_RS01730 | - | 371254..371823 (+) | 570 | WP_001293091.1 | terminase small subunit | - |
| CD017_RS01735 | - | 372100..373068 (+) | 969 | WP_000801980.1 | Abi family protein | - |
| CD017_RS01740 | - | 373364..373645 (+) | 282 | WP_001577971.1 | hypothetical protein | - |
| CD017_RS01745 | - | 373763..374275 (+) | 513 | WP_000813311.1 | hypothetical protein | - |
| CD017_RS14610 | - | 374291..374470 (+) | 180 | WP_000797954.1 | hypothetical protein | - |
| CD017_RS01755 | - | 375045..376052 (-) | 1008 | WP_001080636.1 | Abi family protein | - |
| CD017_RS14510 | - | 376058..376773 (-) | 716 | Protein_337 | tyrosine-type recombinase/integrase | - |
| CD017_RS01770 | - | 377010..377378 (+) | 369 | WP_000849155.1 | YxeA family protein | - |
| CD017_RS01775 | - | 377559..378131 (+) | 573 | WP_000769723.1 | PepSY domain-containing protein | - |
| CD017_RS01780 | - | 378269..378532 (-) | 264 | WP_001055897.1 | helix-turn-helix domain-containing protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=234662 CD017_RS01635 WP_000934799.1 359120..359623(+) (ssbA) [Staphylococcus aureus strain Seattle 1945 isolate G477]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=234662 CD017_RS01635 WP_000934799.1 359120..359623(+) (ssbA) [Staphylococcus aureus strain Seattle 1945 isolate G477]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |