Detailed information NTG0023401

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACIAD_RS01675
• Genome accession: NC_005966
• Coordinates: 352513..353373 (-)
• Length: 286 a.a.
• NCBI ID: WP_004920478.1
• Uniprot ID: A0A7G2SJN3
• Organism: Acinetobacter baylyi ADP1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 347513..358373

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACIAD_RS01650 (ACIAD0355)	-	348407..349714 (+)	1308	WP_004920495.1	tetratricopeptide repeat protein	-
ACIAD_RS01655 (ACIAD0356)	-	349793..350119 (+)	327	WP_004920494.1	pyrimidine/purine nucleoside phosphorylase	-
ACIAD_RS01660 (ACIAD0357)	rlmB	350219..350965 (+)	747	WP_004920490.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
ACIAD_RS01665 (ACIAD0358)	-	351006..351923 (+)	918	WP_004920488.1	DMT family transporter	-
ACIAD_RS01670 (ACIAD0359)	coaE	351920..352507 (-)	588	WP_004920482.1	dephospho-CoA kinase	-
ACIAD_RS01675 (ACIAD0360)	pilD	352513..353373 (-)	861	WP_004920478.1	prepilin peptidase	Machinery gene
ACIAD_RS01680 (ACIAD0361)	pilC	353373..354599 (-)	1227	WP_004920476.1	type II secretion system F family protein	Machinery gene
ACIAD_RS01685 (ACIAD0362)	pilB	354628..356340 (-)	1713	WP_004920473.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACIAD_RS01690 (ACIAD0363)	tpiA	356605..357402 (+)	798	WP_004920470.1	triose-phosphate isomerase	-
ACIAD_RS01695 (ACIAD0364)	secG	357412..357741 (+)	330	WP_004920467.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32322.80 Da
• Isoelectric Point: 7.9704

>NTDB_id=23401 ACIAD_RS01675 WP_004920478.1 352513..353373(-) (pilD) [Acinetobacter baylyi ADP1]
MSDFIRYFSENLTALYCLVGILSLCIGSFLNVVIFRTPKMMEQEWKQECQMILHPDQPLIESEKLTLSYPASTCPHCHTP
IRWYQNIPLISWLFLRGKCQSCKASISSRYPLVELLTMLCSLLVVVVFGATLHMLFGLVLTWILIALTFIDFDTQLLPDR
FTLTLAGLGLAVNSFTIYVSPTQAIWGYIVGFLCLWIVYYIFKLITKKEGMGYGDFKLLAALGAWMGPMMLPLIVLLSSC
VGAIIGIILLRKRQENQPFAFGPYIAIAGWIAFLWGDQIMKVYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=23401 ACIAD_RS01675 WP_004920478.1 352513..353373(-) (pilD) [Acinetobacter baylyi ADP1]
ATGTCTGACTTCATTCGTTATTTTTCTGAAAATTTAACTGCTTTATATTGTCTTGTAGGTATTTTAAGTCTATGTATAGG
AAGCTTTCTCAATGTTGTGATTTTTCGCACACCCAAAATGATGGAACAAGAATGGAAACAAGAATGTCAGATGATATTAC
ATCCAGATCAGCCACTCATCGAAAGTGAAAAGTTAACGCTCAGTTACCCTGCTTCAACTTGTCCACACTGTCATACTCCT
ATCCGCTGGTATCAAAATATTCCATTAATCAGTTGGTTATTTCTACGTGGTAAATGTCAGTCATGCAAAGCTTCCATCAG
TAGTCGTTATCCGCTGGTTGAGTTACTGACCATGCTTTGTTCGCTGCTGGTGGTTGTGGTATTTGGTGCGACACTACACA
TGCTTTTCGGTTTAGTGCTGACCTGGATATTGATTGCGCTGACCTTTATTGACTTTGATACCCAGCTTCTACCTGATCGT
TTTACCCTGACACTTGCAGGATTAGGGTTAGCTGTAAATAGCTTCACAATCTATGTTTCCCCCACTCAAGCGATTTGGGG
TTATATTGTGGGCTTCCTTTGCCTCTGGATTGTGTATTACATTTTTAAGCTGATTACCAAAAAAGAAGGCATGGGCTATG
GCGATTTTAAATTACTCGCGGCTCTAGGAGCATGGATGGGACCCATGATGCTGCCATTGATCGTGCTCTTGTCATCCTGC
GTCGGCGCCATTATTGGTATCATTTTGCTACGTAAGCGTCAGGAAAATCAGCCTTTTGCATTTGGTCCCTATATCGCGAT
TGCAGGTTGGATTGCATTTTTGTGGGGCGATCAGATTATGAAAGTCTACCTGGGAGGCTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

3D structure

• AlphaFold DB: A0A7G2SJN3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	78.322	100	0.783
pilD	Acinetobacter baumannii D1279779	77.273	100	0.773
pilD	Vibrio cholerae strain A1552	55.351	94.755	0.524
pilD	Vibrio campbellii strain DS40M4	53.008	93.007	0.493
pilD	Neisseria gonorrhoeae MS11	46.241	93.007	0.43