Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AM403_RS12755 Genome accession   NZ_CP021852
Coordinates   2716074..2716598 (-) Length   174 a.a.
NCBI ID   WP_004249162.1    Uniprot ID   A0A1Z1SRL1
Organism   Proteus mirabilis strain AR_0156     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2711074..2721598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM403_RS12735 (AM403_12725) plsB 2711296..2713779 (-) 2484 WP_036895727.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  AM403_RS12740 (AM403_12730) - 2713910..2714281 (+) 372 WP_004245908.1 diacylglycerol kinase -
  AM403_RS12745 (AM403_12735) lexA 2714409..2715020 (+) 612 WP_004245906.1 transcriptional repressor LexA -
  AM403_RS12750 (AM403_12740) zur 2715202..2715732 (-) 531 WP_004245904.1 zinc uptake transcriptional repressor Zur -
  AM403_RS12755 (AM403_12745) ssb 2716074..2716598 (-) 525 WP_004249162.1 single-stranded DNA-binding protein SSB1 Machinery gene
  AM403_RS12760 (AM403_12750) uvrA 2716851..2719685 (+) 2835 WP_004249165.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18830.90 Da        Isoelectric Point: 4.9468

>NTDB_id=233808 AM403_RS12755 WP_004249162.1 2716074..2716598(-) (ssb) [Proteus mirabilis strain AR_0156]
MASRGVNKVILIGNLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVNIGGTMQMLGGRGGQDNAPSQGQGGWGQPQQPQASQQFSGGAPSRPAQQPAAAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=233808 AM403_RS12755 WP_004249162.1 2716074..2716598(-) (ssb) [Proteus mirabilis strain AR_0156]
ATGGCGAGCAGAGGCGTTAACAAAGTTATTCTTATCGGTAATTTAGGGCAGGATCCAGAAATCCGTTATATGCCAAGTGG
TGGTGCAGTGGCAAATCTGACACTAGCAACTTCAGAAAGCTGGCGCGACAAACAAACCGGTGAAATGAAAGAGAAAACCG
AATGGCACCGTGTGGTCATTTTCGGCAAACTAGCAGAAATTGCTGGCGAGTATCTGCGCAAAGGTTCACAAGTTTATATT
GAAGGTCAATTACAAACACGTAAATGGCAAGATCAAAGTGGTCAAGATCGCTACAGCACTGAAGTTGTGGTGAATATCGG
TGGCACAATGCAGATGTTAGGTGGCCGTGGTGGTCAAGATAATGCACCTTCACAAGGCCAAGGCGGTTGGGGTCAACCTC
AGCAACCACAAGCATCACAACAGTTTAGTGGTGGCGCACCATCTCGCCCAGCACAACAACCCGCAGCGGCACCAGCGCCA
AGTAATGAACCACCAATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Z1SRL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.892

100

0.764
  ssb Glaesserella parasuis strain SC1401

57.065

100

0.603
  ssb Neisseria meningitidis MC58

48.023

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.489

Multiple sequence alignment